Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00237 ATGGTTTCTAGAGAGCAAAAGAGAGCATCACTGCATGAGAAGCTGCAACTTCTTCGTTCTATTACGAACTCTCATGCCCTAAACAAAACCTCGATCATAATAGATGCATCAAAGTATATCCAAGAGTTAAAGCAAAAAGTAGAAAGACTGAATCAAGACGTAGGCAATGCACAAACTTCAAGTGACCAAAATACTTTGCCTATGGTTACAGTAGAAAGCTTAGAGAAAGGATTTCTTATAAATGTATTTTCAGCAAAGAGCTGCCCTGGTCTGCTTGTTTCCATATTGGAGTCATTTGAAGAGATGGGTCTTAATGTGCTCGAAGCTAGAGTTACTTGCACAGACACCTTTCGATTTCATGCTGTTGGAGGAAAAAATGAAGAACAAAATGAGAGCATTGATGCACAAGCTGTGAAACAGGCAATGGGACTAGCAATAAAGAACTGGAGCGAAAATGCTGACCAAAAGTAA 471 0.3907 MVSREQKRASLHEKLQLLRSITNSHALNKTSIIIDASKYIQELKQKVERLNQDVGNAQTSSDQNTLPMVTVESLEKGFLINVFSAKSCPGLLVSILESFEEMGLNVLEARVTCTDTFRFHAVGGKNEEQNESIDAQAVKQAMGLAIKNWSENADQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00237 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 61 IPR036638 GO:0046983
Cca01g00237 156 CDD ACT_UUR-ACR-like 89 146 - -
Cca01g00237 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 154 - -
Cca01g00237 156 PANTHER TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN 1 154 - -
Cca01g00237 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00237 Cca-Chr1 2463013 2464906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00237 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.556 1.80e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00237 - - gmx:100814138 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00237 01 2463013 2464906 Cca05g01655 05 35938490 35939978 PCT