Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00231 ATGGAGAAAAGGGGGAGTGTGTTGATGCAGAAGTACGAGTTTGGAAAATTGTTAGGGCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAGAACTGGTGAGAGTGTTGCCATTAAGGTGATCGACAAGGAGAAAATTCTGAAAATTGGGTTGGAGAATCAAACCAAGCGAGAGATATCTATTATGAAACTGGTTAAACACCCCAATGTTTTGCAGCTTTATGAGGTTTTGGCCACCAAGACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACAGGGTAGCTAAAGGTAGATTCCATGAGAACAAGGCAAGGAAGTACTTTCAACAATTGATCAGTGCTGTCGATTTTTGCCACAGTAGGGGTGTTTATCACAGGGATTTGAAGCCGGAGAATTTGCTTTTGGATGAGAATGGAGTTCTCAAGGTAGCGGATTTCGGATTGAGTGCACTTGTAGAATCTCATCGTCATGACAGCATGCTGCATACTGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGCAGAAAGGGTTATGATGGAGCAAAAGCTGATGTGTGGTCTTGTGGAGTGATCTTGTTTGTTCTTTTGGCTGGTCATCTGCCATTCCATGATTTGAATCTTATGTCACTGTATAGGAAAATAGGTAGGGCTGATTACCAGTGTCCAAACTGGTTTTCAATTGAAGTGCGCAGATTGTTGGCAAAAATCCTTGACCCTAACCCAGATACTAGGATATCCATGGCAAAGATTTTTGCAAATTCTTGGTTTAGAAAGGGATTTAACTCCAAATATGGTCAAGTGAAAAGAGAGGCTACAAATGTGGCCTTAGTTGATTCTGATCAAGCTTTTGGTTTGTGTGAGAATGCAAGTGTTGCTGCTGAGGCAGATCAAGCATTGGTTAAACCTGCACATTTGAATGCTTTTCACATAATTTCTCTGTCTGCTGGGCTTGACTTGTCTGGCCTTTTTACTGGCAATGTTGAACTGGAAGATATGAAATTTATATTCATGAGCTCTGCCTCATCCATCATGTCTACCATGGAGGATATTGCTGGCATTTTGAGGATGGAGATAATCAAGAAGGATGAAAGATTGGTGAAATTGGAGAGATCCAGGGAAGGTAGAAAAGGACCACTTTCCATTGATGCTGAAATATTTGAGGTCACCCCATCTTTCCATTTGGTTGAGATGAGGAAATCCTGTGGTGATGCATTAGAATACCAGAAGATATTGAAGGAGGATTTAAGGCCAGCTCTCAAAGATATTGTTGGTGTTTGGCAAGGTGAGCAGCATCTCCAGTAG 1332 0.4159 MEKRGSVLMQKYEFGKLLGQGNFAKVYHARDLRTGESVAIKVIDKEKILKIGLENQTKREISIMKLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNRVAKGRFHENKARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLSALVESHRHDSMLHTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILFVLLAGHLPFHDLNLMSLYRKIGRADYQCPNWFSIEVRRLLAKILDPNPDTRISMAKIFANSWFRKGFNSKYGQVKREATNVALVDSDQAFGLCENASVAAEADQALVKPAHLNAFHIISLSAGLDLSGLFTGNVELEDMKFIFMSSASSIMSTMEDIAGILRMEIIKKDERLVKLERSREGRKGPLSIDAEIFEVTPSFHLVEMRKSCGDALEYQKILKEDLRPALKDIVGVWQGEQHLQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00231 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cca01g00231 443 CDD CIPK_C 316 430 - -
Cca01g00231 443 PANTHER - 2 441 - -
Cca01g00231 443 Gene3D Kinase associated domain 1, KA1 310 436 - -
Cca01g00231 443 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00231 443 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
Cca01g00231 443 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cca01g00231 443 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00231 443 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cca01g00231 443 Gene3D Transferase(Phosphotransferase) domain 1 92 272 - -
Cca01g00231 443 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Cca01g00231 443 SUPERFAMILY Protein kinase-like (PK-like) 8 290 IPR011009 -
Cca01g00231 443 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00231 443 Pfam NAF domain 312 369 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00231 Cca-Chr1 2400762 2402093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00231 1 440 CBL-interacting serine-threonine protein kinases AT5G58380 59.161 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca01g00231 Pkinase 8.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00231 K07198 - gmx:100816254 763.837