Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00221 ATGGCAGCTCTCTCAAAGCTATTGAACAAGGTTTGTGGGAAAATGATAATCCTATTGGCATCCTTGGTAATAGAAGTAATCATCCTGCTTCAGAAACTAAGGTCAGGTCCAATTACGACACGCCAATACCTCAAACTGATCGAAAAGAAGAACCCCACCATTTGCTACACCAAGAGATTGAAGGCAGAGCAAGCAGAGTGTAGGGTGTGCTTGAGCCAATTCCAGGAAGGGGAGAAGCTCAGGAAGTTGAAATGCCAACACACCTTTCATAGGGATTGTTTGGACACGTGGCTGCAGCAATATAAGGCTACGTGCCCTCTTTGTAGGAAACAAGTGCTGCCCGAGGATGTTGTCTTCAAACATCGTCAGCATCGAAATCAAGCAGCAGAGAATCATCACAACCTTCCTTATCTTTTCTCCGCGTTTCGTGGTCGCAACACTTTGCAAATCAATTACCCAACCTTCTCTTCCTCATACCTCATAGACTATACTTAA 495 0.4465 MAALSKLLNKVCGKMIILLASLVIEVIILLQKLRSGPITTRQYLKLIEKKNPTICYTKRLKAEQAECRVCLSQFQEGEKLRKLKCQHTFHRDCLDTWLQQYKATCPLCRKQVLPEDVVFKHRQHRNQAAENHHNLPYLFSAFRGRNTLQINYPTFSSSYLIDYT 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00221 164 Pfam Ring finger domain 66 109 IPR001841 -
Cca01g00221 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 114 IPR013083 -
Cca01g00221 164 CDD mRING-H2-C3H2C2D_ZSWM2 66 109 - -
Cca01g00221 164 PANTHER - 1 147 - -
Cca01g00221 164 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Cca01g00221 164 SUPERFAMILY RING/U-box 47 115 - -
Cca01g00221 164 SMART ring_2 67 108 IPR001841 -
Cca01g00221 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00221 Cca-Chr1 2296642 2297136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00221 65 120 C3H Transcription Factor Family AT1G15100 51.786 1.68e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00221 K16282 - gmx:102668078 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02169 09 46826053 46828131 Cca01g00221 01 2296642 2297136 PCT