Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00213 ATGTTGAGCTTGAGCCTAGCCGTTATTAAAATAATAGGAGGCGAGGCTGTGAGCTGTGAGCTTGGAGCTGTTGTCGGTGCTCATAATGTTTACGAGTCTGAAAACACCCAAAGCCTCTTCCCTTCACTGTCACACACACTCCCTTGTCCACCAAAATCAACCATTCAAAGCTTCCATTTAAAACCGAAAAATCACATACAATACCAAATCTATCTCCCACCAATCCATGCGTCACCctcacgctcccacgccagcttcgcttctcgttctcgctctcTCAAGGGAGGCTTTGATGTTCTGAGAGACTCTCCGCTGGCGACTACACTGACTTGGAGGTTTGCTGCCAATAATGGCAGCACCCTTGCTGCTAATGATATGGAAAGAAATGGTGACGGGAAGGCTCAAGATTCAGAGCCTCTACCTCCCCATTCTGTTTTGAAGATGGGATTGAGAGAACGTAACAACAGCAGCAACATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCTCAATGCATTGAGCAACTGCGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCTTTAAAGCAGTTATTAGAACTTATTGATATGCGAGAAAATGCTTTCAGTGCAGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCACTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCTCCTTTGCTTGCTCTACTCAAGTCCAGTTCTACTGAAGGCCAAGTAGCTGCTGCAAAGACTATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAATGCTATGGGAGCAGCTGCAAAAGGGCCTGAAGGCTGGAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGCAGCACTGAGAGATTCTGGAATGCAACAATACAAGCTGGAGGAGTTGACATATTAATTAAGTTACTGACAGCAGGGCAGTCTAGCACTTTAGCAAATGTGTGCTTTTTACTTGCTTGTATGATGATGGAGGATGCATCTGTTTGTTTAAAGGTGTTGACAGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCCCGGTAATGATGCCCCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTTCCCAGTGCAAAGATTCTAGGAAAGAGATAGCTAATTCCAACGGTATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAATATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCATCACCTACCCAAGCTGCCGACACATTGGGAGCTTTAGCTTCAGCTCTGATGATATATGATGACAAGGCAGAATCTACCAGGGCATCGGATCCTTTGGTAGTTGAGCAGACATTACTTGAACAGTTTAAACCTCGCTTGCCATTCCTTGTACAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCGATACTGTCAATTAAACTTGCAAATTCTGATGCAAAGCGTTTACTTGTTGGTTTAATAACAATGGCCGCCAATGAAGTGCAAGAAGAGCTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCAGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCGGCATCAATCCTTAGGAATCTATGCGACCACAGTGAGGATATCCGTGCTTGTGTTGAAAGtgctgatgccgttcctgcattgctgtggctgttgAAGAATGGAAGCCCAAATGGGAAGGAGATTGCTGCAAAGACCTTGAATCACTTGATTCATAAATCTGATACAGCTACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTTCTGATCTTCTACGTGAAGGTAGTGCTTCCAATGATGCAATTGATACAATGATAAAATTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATATGCTCTGGCGGGAATTTTTGAAACGAGGAAAGACGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTCTGGTCAGCAATGAAGTTGCTTAATGTTGAATCTGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCAATATTTCTTTCCATTAAAGAGAACAGGGAAGTGGCCGCTATTGCTAGAGATGCATTACCCTCCCTAGTTGCACTAGCTAACTCTTCAGTTTTAGAAGTGGCGGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATGGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAAGTCATCTTGGCTGCTACTAGAGTATTGCGTGAAGGCACAATCTCCGGTAAAACTCATGCTGCTGCAGCAATTGCTCGTCTCTTACATTCTAAGAGGCAAGTTGATTATGCTGTAACTGACTGTGTGAATCGTGCTGGTACTGTTCTTGCACTAGTTTCTTTCTTAGACTTTGCTATCAATGGACCTAGTTCTACATCAGAAGCTCTGGAAGCACTTGCCATGCTGTTCAGGTCAGAAGAGACCGGGGCACACAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATAAGCCCTATAGTTCTGTCTATTGTTGATTCAACACCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCGATTATGTAAGGATCAGCCTTTTGTTTTGGGAGACACTGTTGTTACTGCCACTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTAAAAATGTAAATGTCAAAATTGGAGGAGCTGCTGTTCTTATTTGTGCTGCTAAAGTAAATCATCATAGGGTTGTGGAGGATCTCAATTTATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTTGTCGATATGCTTATTTCTTCACAGGCTACTTTGGATAACCAGGGTGATGATAGTAGGGAAGTTATCAGCATTTGCAGGCATGCAAAAGAAGCCAATAAATCAAACACCGGCACTGCTATTATTTCTGGTGCGAACTTAGCTATATGGTTACTGTCTGTTCTTGCTTGCCATGATGAAAAGAGTAAAATTGCAATAATGGATGCTGGAGCGATTGAGGTTCTCACTGACAGGATTGCAAATTGTTTCTCTCAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACCATGAAATCTATACCAGCCCTTGCCAATTTGTTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTAGCAAATTCAGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTTTGGAATTGTCTGAGGAACTTTCTTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAAAGGTTGTTTAGAGTTGATGACATTAGAGTTGGTGCCACTTCTCGGAAGGCGATACCTGCTCTAGTTGATTTGCTCAAACCAATTCCAGAACGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTGTAGATTGTCCATCGAATAAGATTGTAATGGTTGAGGCAGGGGCACTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACAGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAGTCCGCATTTGGGGCTGTTACTCAGCTTGTTGCTGTACTGCGTTTAGGAGGAAGAGCTGCAAGATATAGGGCTGCAAAAGCATTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGAGACTTCTCGACAGGCAGTTCAACCGTTGGTGGAGATACTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCAGCATTGGTTAGATTACTGAGTGAAAACCCTTCAAAAGCACTTGCTGTTGCGGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGCTCTGTTCTTTTTGGAAATACAAGGATTCGGTCCACAATAGCTGCTGCACGTTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTGGTTGCTGCACATGGTGCAGTGATTCCTCTAGTTGGCCTACTGTATGGTAGGAATCATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCAGCTTGTAAAATGGAAATGGTGAAAGCTGGGGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTAGTTGAACCCCTGTTTATGTTGCTGACGAGACAAGAATTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTGGAACATCCACAGTGTCGTGCTGATTACACATTGAATTCTCATCAAGCTATTGAACCACTTATCCCTTTGCTTGATTCCCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTACTATTAGAAGAACACCTTCAGAAAGATCCAGTGACGCAACAGGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTGGTCAGTATTGCATTGATATGGCCCAATGAAATTGCAAAAGAGGGTGGTGTTCTTGAAATTTCGAAAGTTATATTGCAAGCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTTCAATTCAGTTCTGAATACTACTTGGAAGTTCCAGTTGCTGTTTTGGTAAGGCTGCTTCGATCTGGCTTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCAATGGCGGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTACTAAGGTCTCATCAATGTGAAGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAAATTAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGATCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTTATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATACTGGATTTGATTGGTTCAAGCGATCCTGAAACATCTGTTCAGGCTGCAATGTTCATTAAACTTCTATTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTTAGAGCAATAACTGCCGCTATTGAAAAAGACTTATGGGCTACTGGAACTGTGAACGATGAGTATCTTAAAGCCTTGAATTCTCTATTTAGCAACTTCCCAAGACTGAGAGCAACTGAACCAGCTACACTTAGCATTCCCCATCTGGTTACCTCCTTAAAGACAGGCTCAGAGGCTACTCAGGAAGCTGCCTTGGATGCGCTTTTCCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCCCAGTCCATAGCAGCTGCCGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGTCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTACAGTGTTTGCCAGGAACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGCAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTACATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTAGTAATGCTAGGAGCCGTATCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAATGGTCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6774 0.4234 MLSLSLAVIKIIGGEAVSCELGAVVGAHNVYESENTQSLFPSLSHTLPCPPKSTIQSFHLKPKNHIQYQIYLPPIHASPSRSHASFASRSRSLKGGFDVLRDSPLATTLTWRFAANNGSTLAANDMERNGDGKAQDSEPLPPHSVLKMGLRERNNSSNMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLALLKSSSTEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPMLWEQLQKGLKAGNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILIKLLTAGQSSTLANVCFLLACMMMEDASVCLKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSSQCKDSRKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTRASDPLVVEQTLLEQFKPRLPFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMAANEVQEELLKSLLTLCNTECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALSDLLREGSASNDAIDTMIKLLSSTKEETQAKSAYALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENREVAAIARDALPSLVALANSSVLEVAELATCAVANLILDGEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHSKRQVDYAVTDCVNRAGTVLALVSFLDFAINGPSSTSEALEALAMLFRSEETGAHSKPAWAVLAEFPKSISPIVLSIVDSTPVLQDKAIEILSRLCKDQPFVLGDTVVTATGCISSIAKRIINSTSKNVNVKIGGAAVLICAAKVNHHRVVEDLNLSNLCANLVQSLVDMLISSQATLDNQGDDSREVISICRHAKEANKSNTGTAIISGANLAIWLLSVLACHDEKSKIAIMDAGAIEVLTDRIANCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEELSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAVDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETSRQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTIAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNHVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLNSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVLEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKNGPSRNLEIEFQWSNK 2257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00213 2257 SUPERFAMILY ARM repeat 988 1265 IPR016024 -
Cca01g00213 2257 SUPERFAMILY ARM repeat 1741 2134 IPR016024 -
Cca01g00213 2257 Pfam Armadillo/beta-catenin-like repeat 631 671 IPR000225 GO:0005515
Cca01g00213 2257 Pfam Armadillo/beta-catenin-like repeat 210 240 IPR000225 GO:0005515
Cca01g00213 2257 SMART C2_3c 2137 2233 IPR000008 -
Cca01g00213 2257 SMART arm_5 1335 1376 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 242 282 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1417 1458 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 673 713 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1587 1627 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 374 415 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 200 241 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1671 1713 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 417 466 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1290 1333 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1545 1585 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1836 1875 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1504 1544 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 631 671 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 1963 2003 IPR000225 GO:0005515
Cca01g00213 2257 SMART arm_5 839 877 IPR000225 GO:0005515
Cca01g00213 2257 Gene3D - 1283 1392 IPR011989 -
Cca01g00213 2257 SUPERFAMILY ARM repeat 323 715 IPR016024 -
Cca01g00213 2257 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2135 2254 IPR035892 -
Cca01g00213 2257 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 123 2257 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Cca01g00213 2257 SUPERFAMILY ARM repeat 1300 1502 IPR016024 -
Cca01g00213 2257 Gene3D - 513 759 IPR011989 -
Cca01g00213 2257 SUPERFAMILY ARM repeat 171 371 IPR016024 -
Cca01g00213 2257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1302 1346 IPR000225 GO:0005515
Cca01g00213 2257 SUPERFAMILY ARM repeat 1429 1760 IPR016024 -
Cca01g00213 2257 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 123 2257 - -
Cca01g00213 2257 Gene3D - 976 1279 IPR011989 -
Cca01g00213 2257 Gene3D - 760 975 IPR011989 -
Cca01g00213 2257 Gene3D - 155 512 IPR011989 -
Cca01g00213 2257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 684 IPR000225 GO:0005515
Cca01g00213 2257 Pfam C2 domain 2136 2232 IPR000008 -
Cca01g00213 2257 SUPERFAMILY ARM repeat 720 1059 IPR016024 -
Cca01g00213 2257 ProSiteProfiles C2 domain profile. 2117 2234 IPR000008 -
Cca01g00213 2257 MobiDBLite consensus disorder prediction 122 143 - -
Cca01g00213 2257 Gene3D C2 domain 2135 2257 IPR035892 -
Cca01g00213 2257 CDD C2 2138 2228 - -
Cca01g00213 2257 Gene3D - 1757 2134 IPR011989 -
Cca01g00213 2257 Gene3D - 1393 1754 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00213 Cca-Chr1 2203841 2214188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00213 594 726 U-box Gene Family AT2G23140 40.741 3.38e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00213 - - gmx:100816765 3888.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02165 09 46783447 46794464 Cca01g00213 01 2203841 2214188 PCT