Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00208 ATGTGCAGGAGCTCTAGTAATTCAGAGATGGTTGTTTCGAACAAAAGCACGTTAGAAGAAGTTCTTGACATTGAGAAGAATAAGATGCATGCTCAGTGGGTGCTGAATCCTCCAGAACCACCTTCCATGTTGCATCAGATTGTGGACAACGTCAAGGACACCCTCTTACCCCATCCAAATCCAAACGCATTCTCTTCTCTCAGGAATCAGCCCTTTTCCAAACGCGCTTTCGCCTTCTTCCAGGACTTGTTTCCCATTCTCGCTTCCTTCCAAGACTACAATACCCACAAGCTCAAGTGCGATTTCATGGCTGGTCTTACCCTTGCAATCTTCGCCATTCCTCAGTGTATGGGAAATGCGACATTGGCGCAACTAAGTCCTGAATATGGCCTCTATACGAGCATTGTGCCACCTTTTATTTATGCGTTGCTAGCGAGTTCAAGGGAGATAGTGATTGGACCTGGATCTGTGGATTCACTGCTAATTTCCTCAATGATTCAGACATTGAAAGTGCCAATTCATGATTCTATTGCATACACTCAGCTTGTTTTCACAGTTACTTTTTTTGCGGGCATCTTTCAAGTTGCTTTCGGCTTCTTTAGGTTGGGTTTTCTGGTCGAATATCTTTCCCAAGCCACCATCGTCGGCTTCTTGGCAGCAGCTGCCGTCGGCATTGGACTTCAACAACTGAAAGGATTATTTGGGATCGTTAACTTTACCAACAAAACTGCTTTGTTTTCTGTCCTCAAAGCTGTTTGGACATCCTTCAAAAACAAATCAGAGTGGCACCCTTACAACTTCATTATTGGAATCTCATTTCTCTGTTTCATCCTATTTACCAGATTCCTGGGCAAAAGGAACAAGAAACTCATCTGGTTGTCACACGTTGCACCCCTCCTTTCTGTTATTGTATCCTCTGTTATTGCATACAAATTAAATGTTGGAGAGCATCACGTGAAGGACTACAGAGTTGAAGTCTTGGGACCAATTAAAGGAGGTGGCTTTAATCCAAGCTCACTCTACCTGTTAACATTTGATGCCAGAGTTGTGGGTCATTTGATTAGAATAGCCTTCATCATTTCTATTATTTCACTCACCGGATCTATTGCTGTTGGACGATCATTTGCATCTCTAAGAGGACACAGTATTAATCCCAACAGAGAAGTGGTATCCTTGGGCATAATGAACATAGTTGGATCCTTCACTTCTTGTTACGTTGCATCAGGGTCATTGTCACGTACGGCTGTAAACTACAATGCTGGGTCTGAAACTATGGTGTCCAACATAGTGATGGCACTCACAGTGCTCATGTCACTTAAATTTTTGACGGGGCTTCTGTATTTCACTCCGAAAGCAATCCTAGCAGCAATAATTCTTTCGGCTGTGCCAGGACTGATTGACCTAAACAAAGCATGTGAAATTTGGAAGGTTGATAAAATGGATTTCCTTGCTTGTGCTGGAGCCTTCTTGGGAGTCTTGTTTGCATCTGCAGAAATAGGCCTTGCAATTGGGATCGCGATATCATTTTTGAAGATAATTATAACCTCAATTCAACCTGCTATAGCACTTGTTGGAAGGCTTCCAGGAACGGATGCATTTGGCGATGCTCAACAATACCCAATGGCTGTCAACATTCCTGGAGTTCTCATTGTCTCTTTAAAATCTGCTTGGTTTTGTTTTGCAAATGCAAACCTTGTACAAGAAAGGATTGAGAGATGGATGACTAGTGAAAAAGTCAAGGATGGCAAAGGAGGAGAAAACACCTTCACACACGTCATTTTGGATGCCTCAAGTCTTACGAATATTGACACCGCGGGAATTGCTTCTTTGATGGAGCTCAATAAAAATTTGACTTCACGTGGAATAAAGTTAGCAATCGCTAACCCTAGGTGGAATGTAATTCACAAACTAAGATTAGCTAACTTCGTGAGCAAAATTGGAGGAAGAGTTTTCCTTTCTGTGGGAGAAGCAGTAGATGCATGTCTTGGCTCTAAAGTGGTTCCTGTATAA 2010 0.4249 MCRSSSNSEMVVSNKSTLEEVLDIEKNKMHAQWVLNPPEPPSMLHQIVDNVKDTLLPHPNPNAFSSLRNQPFSKRAFAFFQDLFPILASFQDYNTHKLKCDFMAGLTLAIFAIPQCMGNATLAQLSPEYGLYTSIVPPFIYALLASSREIVIGPGSVDSLLISSMIQTLKVPIHDSIAYTQLVFTVTFFAGIFQVAFGFFRLGFLVEYLSQATIVGFLAAAAVGIGLQQLKGLFGIVNFTNKTALFSVLKAVWTSFKNKSEWHPYNFIIGISFLCFILFTRFLGKRNKKLIWLSHVAPLLSVIVSSVIAYKLNVGEHHVKDYRVEVLGPIKGGGFNPSSLYLLTFDARVVGHLIRIAFIISIISLTGSIAVGRSFASLRGHSINPNREVVSLGIMNIVGSFTSCYVASGSLSRTAVNYNAGSETMVSNIVMALTVLMSLKFLTGLLYFTPKAILAAIILSAVPGLIDLNKACEIWKVDKMDFLACAGAFLGVLFASAEIGLAIGIAISFLKIIITSIQPAIALVGRLPGTDAFGDAQQYPMAVNIPGVLIVSLKSAWFCFANANLVQERIERWMTSEKVKDGKGGENTFTHVILDASSLTNIDTAGIASLMELNKNLTSRGIKLAIANPRWNVIHKLRLANFVSKIGGRVFLSVGEAVDACLGSKVVPV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00208 669 CDD STAS_SulP_like_sulfate_transporter 539 652 - -
Cca01g00208 669 PANTHER SULFATE TRANSPORTER 20 667 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca01g00208 669 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Cca01g00208 669 TIGRFAM sulP: sulfate permease 85 654 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca01g00208 669 Gene3D STAS domain 518 664 IPR036513 -
Cca01g00208 669 PANTHER EARLY NODULIN-70 20 667 - -
Cca01g00208 669 Pfam Sulfate permease family 98 486 IPR011547 GO:0016021
Cca01g00208 669 ProSiteProfiles STAS domain profile. 560 661 IPR002645 -
Cca01g00208 669 Pfam STAS domain 539 657 IPR002645 -
Cca01g00208 669 SUPERFAMILY SpoIIaa-like 545 661 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00208 Cca-Chr1 2153575 2162566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00208 4 666 Inorganic Solute Cotransporters AT5G10180 52.616 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00208 K17469 - gmx:100817841 1105.12