Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00204 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTTCCTTAACCGTTTTCCCAAAGCCACCAGCAGCGCCAGGAGGGTACATTTCCATTTCAAGGAGAAGGGTTTTGAAGAACCTTGAAATCAATGGTGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCTTCTCCAACCCATCTTAAGTCCACACCTTCTTTGACTCAGGAGCATAGTTCTTGGATTCTTCGCCATCCCTCGGCATTAGACATGTTTGACCAAATTGTTGACGCGTCAAAGGGTAAACAAATTGTCATGTTTCTGGACTATGATGGTACGCTGTCCCCTATAGTCGAGGACCCTGATCGTGCTTTCATGAGTCATTCGATGAGAAAAACAGTGAGGAAAGTCGCAAGGTGTTTCCCTACTGCTATAGTGACTGGTAGATGCAAAGACAAGGTATACAATTTTGTTCGATTGGCAGAGCTGTACTATGCTGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGACAATTCTTTTTCAAGCAGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTACCAACAGTTGGTTGATAAGACAAAATCAACTTCTGGAGCTTTGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGACTACCCCAAGCTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAGGCCTTGGAATTTTTATTAGAGTCTCTTGGTTTGGCCAATTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGTATTCTTGTCTCCAAATTTCCAAAAGACACAAGTGCATCTTACTCTTTACAGGATCCAAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCAGCGAGCACGTTCCCGTGTGTAA 1089 0.4343 MTQQNVVVSDTKSGVSLTVFPKPPAAPGGYISISRRRVLKNLEINGGQRINAWVESMRASSPTHLKSTPSLTQEHSSWILRHPSALDMFDQIVDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVRKVARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKAETILFQAASDFLPMIDEVYQQLVDKTKSTSGALVENNKFCLSVHFRCVDEKKWSELARQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQDPNEVMNFLQRLVEWKHVSQRARSRV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00204 362 SUPERFAMILY HAD-like 102 351 IPR036412 -
Cca01g00204 362 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 IPR044651 GO:0004805|GO:0005992
Cca01g00204 362 Gene3D - 101 193 IPR023214 -
Cca01g00204 362 Gene3D - 200 361 IPR023214 -
Cca01g00204 362 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 103 314 IPR006379 -
Cca01g00204 362 TIGRFAM T6PP: trehalose-phosphatase 99 349 IPR003337 GO:0003824|GO:0005992
Cca01g00204 362 CDD HAD_TPP 102 343 - -
Cca01g00204 362 Pfam Trehalose-phosphatase 104 338 IPR003337 GO:0003824|GO:0005992
Cca01g00204 362 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00204 Cca-Chr1 2048981 2051445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00204 92 356 Trehalose Biosynthesis Gene Families AT1G06410 26.241 8.81e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00204 K01087 - gmx:100794430 682.174