Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00195 ATGTGCGGAATCCTTGCAGTGTTGGGTTGCGTCGACAACTCTCAGGCCAAGCGCGCTCGCATCATCGAGTTGTCTCGCAGGTTACGGCATAGAGGTCCTGATTGGAGTGGTATACATTGTCATGAGGATTGTTACCTTGCTCATCAACGCCTTGCTATTGTTGACCCTACTTCAGGGGATCAACCTCTCTACAACGAAGATAAGACTGTTATTGTCACTGTAAATGGGGAGATATACAACCACAAGCAATTGAGACAGAAACTAAGTTCTCATCAGTTTCGAACTGGTAGTGATTGTGAAGTGATTACCCATCTTTATGAAGAATATGGAGAAGACTTTGTTGATATGCTGGATGGGATGTTTGCCTTTATTCTTCTTGATACCCGTGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTACTTGGGCTGGGGTCATGATGGATCAACATGGTTTGCATCTGAAATGAAAGCCCTGAGTGATGATTGTGAGAGATTTATATCTTTTCCTCCCGGACATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTTTCAGAGGATGTTCCATCGACTCCGTATGATCCATTGATTTTGCGTGAGACCTTTGAGAAGGCTGTAGTTAAGAGAATGATGACTGATGTACCTTTTGGAGTTCTTTTGTCTGGAGGATTGGACTCATCTCTTGTTGCTGCTGTGGCCAATCGTTATTTGGCTGAATCTGAAGCGGCTCGTCAATGGGGATCACAATTACATACTTTCTGCATTGGTTTAAAGGGCTCTCCGGACTTGAAAGCTGCAAGAGAGGTAGCAGATTATCTTGGTACTCGTCATTATGAACTTTATTTCACAATTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGATGTTACGACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAAGCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTTCATAAAGCACCTAACAAGAAAGAGTTTCATGAAGAAACATGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTAAGAGCTAATAAATCCACTGCAGCATGGGGTGTGGAGGCACGTGTACCATTCTTGGATAAAGAATTTATCAACACAGCCATGAGTATAGATCCAGAGTGGAAAATGATAAGGCCTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGACAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTTAGTGATGGGGTTGGTTACAGCTGGATTGATGCCTTGAAGGATCACGCTAACAAACAAGTCACAGACGCAACGTTGGCGTCTGCTAAATTTATTTACCCTGAAAACACTCCTACTACAAAAGAGGGATACTTCTACAGGGCCATTTTTGAGAAGTTCTTTCCAAAGAATGCAGCAAGGACAACAGTTCCAGGAGGTCCCAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCGTGGTCAAAAAATCCTGACCCTTCTGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATATCAGGATGCAGCAGTGGCTACCAAAATTGACAAAAATGGACCCCTTTAA 1710 0.4246 MCGILAVLGCVDNSQAKRARIIELSRRLRHRGPDWSGIHCHEDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKQLRQKLSSHQFRTGSDCEVITHLYEEYGEDFVDMLDGMFAFILLDTRDKSFIAARDAIGITPLYLGWGHDGSTWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPWFSEDVPSTPYDPLILRETFEKAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLAESEAARQWGSQLHTFCIGLKGSPDLKAAREVADYLGTRHYELYFTIQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKALGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFINTAMSIDPEWKMIRPDLGRIEKWVLRNAFDDDKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHANKQVTDATLASAKFIYPENTPTTKEGYFYRAIFEKFFPKNAARTTVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAYQDAAVATKIDKNGPL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00195 569 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Cca01g00195 569 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Cca01g00195 569 PANTHER ASPARAGINE SYNTHETASE 1 558 - -
Cca01g00195 569 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 209 484 - -
Cca01g00195 569 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 1 558 - -
Cca01g00195 569 Gene3D HUPs 196 514 IPR014729 -
Cca01g00195 569 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Cca01g00195 569 PIRSF Asn_synthetase_glu-h 356 517 IPR006426 GO:0004066|GO:0006529
Cca01g00195 569 PIRSF Asn_synthetase_glu-h 1 362 IPR006426 GO:0004066|GO:0006529
Cca01g00195 569 Pfam Asparagine synthase 210 511 IPR001962 GO:0004066|GO:0006529
Cca01g00195 569 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Cca01g00195 569 CDD AsnB 2 192 IPR033738 -
Cca01g00195 569 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00195 Cca-Chr1 1924720 1931135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00195 2 164 PRT Gene Family AT4G38880 26.923 5.18e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00195 K01953 - gmx:732660 1096.26