Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00190 ATGTCCAACCCTAACTCCAATACAAACGAAGATCCGACCCCAACAATCCACTCGGGGGATCCGAATACCACCGCCGACCCTCAGGTTCCGCTTCGGAACCTGTCCCTGCTTCGGACCAAAATGGATTCTCTACATCACTTCCTATCCCAATCAATCAACACCAGCGCTCCCCTCACCGTCCATCAAATCGCCACGGTCTCAAACCACATCGTCAACGCCATCCACCAAACCATCGTCAACGCCGCCGCCATCGTCTCTTACTCCCGAAATTCCACCGCCGCCGTCGCTCCGTCATATCCGAAGAAACTCAACGCGGATAAACACAAACTCGAGCATCCCGAAGACGACGACGCCGCCGAAGCCTTCGACGGCGATTTCGAAATCGTGGAGCTCGACGCCGTGGAACTCCTCGCGGAACACATCCACTTCTGCGAGATCTGCGGCAAAGGCTTCCGGCGCGACGCGAACCTCCGCATGCACATGCGCGCGCACGGAGAGCGGAACCACTTCAAGAGGAGCCACTGCCCGAAGATGTACACCTGCGAGCTGTGCCGCACGAAGCGGTTCTCGGTGCTGGCGGATCTGAGGAGCCACGTGAAGCACTGCGGAGAGGACAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGCGGAAGGACAAGCTGTTCAGCCACGTGGCACTGTTTGAGGGCCACGCGCCCGCGCTCGCGTGCGACAAAGGGAAGCAAGTGGTGGACGATCATCATCGGATGGGGATTAGTGAAAGTGATGAATTGGGCAATCGCTTTGAGGTTGAGGAGTTGCCTGAAGGGTTCTTCCAAGACTTTGGGTCCATTGATGACTATTGTTTGCGGGAAGTGTTAGGGTTTCCTAGTAACTTGACATGA 885 0.5695 MSNPNSNTNEDPTPTIHSGDPNTTADPQVPLRNLSLLRTKMDSLHHFLSQSINTSAPLTVHQIATVSNHIVNAIHQTIVNAAAIVSYSRNSTAAVAPSYPKKLNADKHKLEHPEDDDAAEAFDGDFEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGERNHFKRSHCPKMYTCELCRTKRFSVLADLRSHVKHCGEDRWKCTCGTTFSRKDKLFSHVALFEGHAPALACDKGKQVVDDHHRMGISESDELGNRFEVEELPEGFFQDFGSIDDYCLREVLGFPSNLT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00190 294 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 167 292 - -
Cca01g00190 294 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 17 167 - -
Cca01g00190 294 Pfam Zinc finger, C2H2 type 143 164 IPR013087 -
Cca01g00190 294 Gene3D Classic Zinc Finger 135 178 - -
Cca01g00190 294 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 167 IPR044300 GO:0010044|GO:0010447
Cca01g00190 294 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 167 292 IPR044300 GO:0010044|GO:0010447
Cca01g00190 294 Gene3D Classic Zinc Finger 179 227 - -
Cca01g00190 294 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Cca01g00190 294 MobiDBLite consensus disorder prediction 1 28 - -
Cca01g00190 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Cca01g00190 294 SUPERFAMILY beta-beta-alpha zinc fingers 139 181 IPR036236 -
Cca01g00190 294 SMART c2h2final6 179 201 IPR013087 -
Cca01g00190 294 SMART c2h2final6 142 164 IPR013087 -
Cca01g00190 294 SMART c2h2final6 207 231 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00190 Cca-Chr1 1881801 1882908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00190 114 255 C2H2 Transcription Factor Family AT1G34370 41.117 1.26e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g00190 zf-C2H2 0.00019 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00190 - - ccaj:109787656 605.905