Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00187 ATGCACGTTGTGCCACTGGTTGATGTCACTGGAAAAATGGATTTGGCATCTGTTCTTTTGCTATTAACTGGCGTGTGCTCTTTTGGGCTGGCTGAGCTTGATTCACAAGGAGATGCACTGTATGCATTGAAGTTATCACTGAATGCTTCTCCAAACCAGCTTACAAACTGGAACAAATATTTAGTAACCCCCTGTACTTGGTCCAATGTTGAATGTGACCAGAATAACAACGTTGTTAGAGTTTCACTAGAATTTATGGGATTCACAGGATCGTTGACACCAAGAATAGGATCTTTAAAAAGTCTTAAAACTCTTTCTTTGCAAGGGAATAACATCACAGGTGAGATACCAAAAGAATTTGGAAACCTCACAAGCTTGATCAGATTGGATTTGGAAAACAACAAATTAACTGGTGAAATGCCATATTCCCTCGGTAATCTTAAAAAGCTTCAATTCTTGACATTAAGTCAAAACAATCTCAATGGGACTATTCCAGAATCACTGGCCAGTCTCCCAAGCTTGGTCAATGTTATGCTAGATTCAAATGATTTTAGCGGGCAGATTCCAGAGCAGTTATTCAGCGTTCCTACGTACAATTTCACTGGAAATAATTTGAATTGTGGTGTTAATTATCATTATCGTTGCACATCTGATAATGAAGAACAAGGCTCGTCACATAAACCAAAAATAGGCCTCGTAGTTGGAATAGTTGCAGGTTTAGTTGTTATTCTTTTTCTCGGTGGCCTGCTGTTCTACTGGTACAAGGGGTGCAAGAGGGAAGTTTTTGTAGATGTTCCAGGTGAAGTTGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTATTCTAGCTGATGGCACAAAAGTTGCTGTCAAAAGGTTATCTGATTACGAAAGTCCTGCGGGTGATACAGCTTTCCACCGTGAAGTTGAGATGATAAGCATAGCTGTCCATAGGAACCTGTTAAGGCTCATTGGCTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTAAAACCTGGGGAAGCCGTTTTAGATTGGCCTACTAGAAAACGAGTGGCTCTAGGATCAGCCCGTGGTCTAGAATATCTTCACGAGCAATGCAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGGGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGATGTTCGAAATACTAACGTGACAACTCAAGTTCGTGGCACAATGGGTCATATAGCTCCAGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACAGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTCACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGACGTGTTGTTGCTTGACCATGTTAAGAAACTGCAACGTGAGAAAAGACTGGATGCTTTTGTCGACAGCAACCTTAATAAAAACTACAACATAGAAGAAGTTGAAATGATTGTACAGATTGCATTACTCTGCACACAAGCATCTCCAGAGGATCGTCCAGCAATGTCAGAGGTTGTAAGAATGTTAGAGGGAGAAGGGCTAGCTGAAAAATGGGAGGAATGGCAGCATGTGGAGGTTGCTACAACGCAAGATTATGAGAGACTACAAAGAAGAATGACCTGGGGAGAAGATTCGATTCATAACCAATATCCCATTGAGTTGTCAGGTGGAAGATAA 1851 0.4052 MHVVPLVDVTGKMDLASVLLLLTGVCSFGLAELDSQGDALYALKLSLNASPNQLTNWNKYLVTPCTWSNVECDQNNNVVRVSLEFMGFTGSLTPRIGSLKSLKTLSLQGNNITGEIPKEFGNLTSLIRLDLENNKLTGEMPYSLGNLKKLQFLTLSQNNLNGTIPESLASLPSLVNVMLDSNDFSGQIPEQLFSVPTYNFTGNNLNCGVNYHYRCTSDNEEQGSSHKPKIGLVVGIVAGLVVILFLGGLLFYWYKGCKREVFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLSDYESPAGDTAFHREVEMISIAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKRVALGSARGLEYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRNTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDAFVDSNLNKNYNIEEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAEKWEEWQHVEVATTQDYERLQRRMTWGEDSIHNQYPIELSGGR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00187 616 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00187 616 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515
Cca01g00187 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 616 - -
Cca01g00187 616 PANTHER LRR RECEPTOR-LIKE KINASE 13 616 - -
Cca01g00187 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Cca01g00187 616 Gene3D Transferase(Phosphotransferase) domain 1 370 587 - -
Cca01g00187 616 Gene3D Ribonuclease Inhibitor 33 217 IPR032675 -
Cca01g00187 616 SUPERFAMILY Protein kinase-like (PK-like) 272 568 IPR011009 -
Cca01g00187 616 SMART LRR_typ_2 99 122 IPR003591 -
Cca01g00187 616 SMART LRR_typ_2 123 146 IPR003591 -
Cca01g00187 616 SMART LRR_typ_2 147 170 IPR003591 -
Cca01g00187 616 SMART LRR_typ_2 171 195 IPR003591 -
Cca01g00187 616 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00187 616 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cca01g00187 616 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Cca01g00187 616 Pfam Protein kinase domain 294 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00187 616 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Cca01g00187 616 SUPERFAMILY L domain-like 35 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00187 Cca-Chr1 1857336 1863854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00187 12 616 Receptor kinase-like Gene Family AT5G10290 72.250 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca01g00187 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00187 - - gmx:100786654 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00187 01 1857336 1863854 Cca09g01736 09 41844347 41852309 PCT