Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00186 ATGGCCATTGCAAGTTTTGGTAGTACAACAGCTACTCAATGGGGAATTCGTCCTCAAATATTCGTGGGATCGACTGGGATGGGGAAGATTGCATCATCCAGGCACAATGTTACAAGCAGGATAAGCTTTCTGGCTACCCCAAGTTCGAGCTTTTCTTTTCGAGATTCCTTGCAGGTACTTTTTGACAAAGGTTCATCGCAAACTTTGCATCGTCGCAGGGGATCAAGGTTGATGGTTAGGGCAGCTGCAGATTATTATTCTGTCCTCGGGGTGTCAAAAAATTCTAGTAAATCTGAAATTAAGACTGCTTATCGGAAGCTTGCCCGGACTTATCATCCTGATGTGAACAAAGAACCTGATGCAGAACAGAAATTTAAGGAAATTAGTAATGTATATGAGGTCTTGTCAGATGATGAGAAACGATCCATATATGACACATATGGAGAGGCTGGCCTCAAAGATTCAGGAATGGGCATGGGGGATTTTAGCAGTCCTTTTGACCTATTTGAGTCGCTGTTTGAGGGCATGGGTGGCATGGGGGGCAGCAGAGCTTCGAGGAATGGAGCAGTTGATGGTGAAGATGAGTATTACAGTCTTGTTTTAAACTTCAAAGAAGCTGTTTTTGGGGTGGAAAAGGAGGTAGAGGTTCGACGATTAGAGAGCTGTGGAACCTGCAATGGTTCaggggctaaaccagggactaaatcatccaagtgtagcacctgtggtggtcagggtcgggttgtgtcatcgacaaggactccattaggcatctttcaacagtctatgacttgctattcttgcaatgggactggagaattttcaacaccttgcaatacatgttctggggaaggtcgagtgaggaAGACAAAGCAGGTAAGTCTCAAGGTTCCTGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAACGAAGGTAATGCTGGAAGGCGTGGGGGTTCTTCTGGTGATCTCTTTGTTGTTCTTGAAGTTATCCCTGACCCCGTGCTTAAGCGATATGACACAGATATTTTATACACATGTAAGGTGTCTTATATTGATGCAATCTTGGGGACTAAAGTTAAGGTACCTACTGTAGATGGCATGGTGGATTTGAAAATCCCAGCTGGGACTCAACCAAGCTCAACACTTGTTATGGCCAAGAAAGGGGTTCCCCTGCTGAATAAAAAGAATATGAGGGGTGATCAATTGGTAAAGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGTTGCCACCAATAAGAGATAA 1323 0.3779 MAIASFGSTTATQWGIRPQIFVGSTGMGKIASSRHNVTSRISFLATPSSSFSFRDSLQVLFDKGSSQTLHRRRGSRLMVRAAADYYSVLGVSKNSSKSEIKTAYRKLARTYHPDVNKEPDAEQKFKEISNVYEVLSDDEKRSIYDTYGEAGLKDSGMGMGDFSSPFDLFESLFEGMGGMGGSRASRNGAVDGEDEYYSLVLNFKEAVFGVEKEVEVRRLESCGTCNGSGAKPGTKSSKCSTCGGQGRVVSSTRTPLGIFQQSMTCYSCNGTGEFSTPCNTCSGEGRVRKTKQVSLKVPAGVDSGSRLRVRNEGNAGRRGGSSGDLFVVLEVIPDPVLKRYDTDILYTCKVSYIDAILGTKVKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPLLNKKNMRGDQLVKVQVEIPKKLSKDERKLIEELADLSKGKTVATNKR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00186 440 Pfam DnaJ domain 84 145 IPR001623 -
Cca01g00186 440 Gene3D - 192 327 - -
Cca01g00186 440 CDD DnaJ 84 137 IPR001623 -
Cca01g00186 440 CDD DnaJ_C 193 415 - -
Cca01g00186 440 PANTHER BNAA01G34580D PROTEIN 36 437 - -
Cca01g00186 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 338 423 IPR008971 GO:0006457|GO:0051082
Cca01g00186 440 Hamap Chaperone protein DnaJ [dnaJ]. 81 435 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca01g00186 440 Gene3D - 222 285 - -
Cca01g00186 440 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 289 IPR036410 -
Cca01g00186 440 Gene3D DnaJ domain 81 185 IPR036869 -
Cca01g00186 440 SMART dnaj_3 83 140 IPR001623 -
Cca01g00186 440 ProSiteProfiles Zinc finger CR-type profile. 209 290 IPR001305 GO:0031072|GO:0051082
Cca01g00186 440 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 36 437 - -
Cca01g00186 440 Gene3D - 332 440 - -
Cca01g00186 440 Pfam DnaJ C terminal domain 197 412 IPR002939 -
Cca01g00186 440 TIGRFAM DnaJ_bact: chaperone protein DnaJ 84 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca01g00186 440 CDD DnaJ_zf 222 285 IPR001305 GO:0031072|GO:0051082
Cca01g00186 440 PRINTS DnaJ domain signature 86 104 IPR001623 -
Cca01g00186 440 PRINTS DnaJ domain signature 104 119 IPR001623 -
Cca01g00186 440 PRINTS DnaJ domain signature 120 140 IPR001623 -
Cca01g00186 440 PRINTS DnaJ domain signature 140 159 IPR001623 -
Cca01g00186 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 344 IPR008971 GO:0006457|GO:0051082
Cca01g00186 440 SUPERFAMILY Chaperone J-domain 81 181 IPR036869 -
Cca01g00186 440 Pfam DnaJ central domain 222 285 IPR001305 GO:0031072|GO:0051082
Cca01g00186 440 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Cca01g00186 440 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00186 Cca-Chr1 1841821 1846987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00186 85 147 C2H2 Transcription Factor Family AT1G74250 43.478 4.97e-10 59.7