Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00183 ATGGAGGAGGAAGAGCACGAGGTGTACGGTGGTGAGATTCCCGACGTCGGAGAGATGGACGGAGACGCTGAGCCTCACCGTGGCTCCGCCGACGTTGACATGTCCGCTGCCGACGACGACGCCGTCAAGGAGCTCGACGAGATGAAGGAGCGCTTGAAGGAAATGGAAGAGGAATCTGCGGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATACTGCCAGTTCAGATGCTTCACAGGCCAACAAGGAGGAGACAGATTCTCGTTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTACAGCAACACTTCCAATCTTGTGGTACAGTGAACAGGGTTACGATCTTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGATGCAGTTCAGGAGGCTCTCCTGTTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAATGTTCCTGGAATGAAACAACATCGTCCTAGGCGCTTTAATCCTTATATGGGGTATCGCTTCAGGAGGCCATATCCTCCCCCTTACTTTTACTCCCCTTATGGATACGGAAAGGTTCCCAGGTTTAGAAGGCCAGGTCGGTACATGCCGTACTATTAG 672 0.5015 MEEEEHEVYGGEIPDVGEMDGDAEPHRGSADVDMSAADDDAVKELDEMKERLKEMEEESAALREMQAKVEKEMGAVQDTASSDASQANKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETDAVQEALLLNESELHGRQLKVMPKRTNVPGMKQHRPRRFNPYMGYRFRRPYPPPYFYSPYGYGKVPRFRRPGRYMPYY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00183 223 SUPERFAMILY RNA-binding domain, RBD 83 194 IPR035979 GO:0003676
Cca01g00183 223 MobiDBLite consensus disorder prediction 19 37 - -
Cca01g00183 223 MobiDBLite consensus disorder prediction 71 94 - -
Cca01g00183 223 MobiDBLite consensus disorder prediction 1 37 - -
Cca01g00183 223 Gene3D - 31 167 IPR012677 -
Cca01g00183 223 SMART rrm1_1 96 167 IPR000504 GO:0003723
Cca01g00183 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 221 - -
Cca01g00183 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
Cca01g00183 223 PANTHER - 1 221 - -
Cca01g00183 223 Coils Coil 38 72 - -
Cca01g00183 223 MobiDBLite consensus disorder prediction 78 94 - -
Cca01g00183 223 CDD RRM_II_PABPs 96 166 - -
Cca01g00183 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00183 Cca-Chr1 1821129 1825873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00183 96 191 Eukaryotic Initiation Factors Gene Family AT2G36660 28.125 8.48e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00183 K14396 - jre:109014561 350.132