Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00175 ATGAAGAGACTTGGCAGCTCAGATTCTTCCCCTCCTCTCATCACAATTTGTCCTTCAACAGAGGAACACAGTCCGAGGAACAGCCATCACATGTATGGTAGGGAGTTCCAATCGATGCTTGACGGACTCGACGAGGAAGGGTGCGTTGAAGAAGCGGGGCATCAATCTGAGAAGAAGCGTAGACTAAGTGTGGATCAAGTCAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAAAGAAAGGTGAAGCTTGCCCAAGAACTCGGGTTGCAACCTAGACAAGTGGCCGTTTGGTTCCAAAACCGTCGAGCTAGGTGGAAAACCAAACAATTGGAAAGAGATTATGGTGTTCTTAAAGCCAACTATGATGCTCTTAAGCTCAACTACGACACCATCAATCAGAACAACGAAGCGCTACGGAAACAGATTAAGGAATTGAAATCAAGATTGGAAGAAGGGAACACCGAAAGCGGATATTCCGTGAAGGAGGAGATAACGATGATGCCGGAGACAGAAGAGAAAACGACGGAACAACAAAGTAAGAGCGACCCATCATGCGAAACCTCGGTTCCAGGTTCGGAGTCGGAGGATCAGTTGAACTACGAGTGTTTCAACAACGGTGTCGGAGCGGCTTCGCTCTTGCAAGTGGACTTCAAAGACGGTTCTTCCGACAGCGACTCGAGCGCGATCTTGAACGAAGacaacaacaacaacaacagcaacaGTCCCAAGACTCAGCATCTGTTACTCTCTCCCGAGTCCTCTCCGTTGAAGTTCAACTGCTCGGTGTCGACGGCGCCGCCACAAGCTCCGGTGAACTATTTTCAGTTCCAGAAAACGTATCAGGCGCAGTACGTGAAGATGGAGGAGCACAATTTCTTGAGCGCGGACGAGGCCTGCAATTTCTTCTCCGACGAACAAGCGCCGACGCTGCAGTGGTACTGTCCAGAGCAGTGGAGCTAA 975 0.4851 MKRLGSSDSSPPLITICPSTEEHSPRNSHHMYGREFQSMLDGLDEEGCVEEAGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDTINQNNEALRKQIKELKSRLEEGNTESGYSVKEEITMMPETEEKTTEQQSKSDPSCETSVPGSESEDQLNYECFNNGVGAASLLQVDFKDGSSDSDSSAILNEDNNNNNSNSPKTQHLLLSPESSPLKFNCSVSTAPPQAPVNYFQFQKTYQAQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCPEQWS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00175 324 MobiDBLite consensus disorder prediction 154 203 - -
Cca01g00175 324 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Cca01g00175 324 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Cca01g00175 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 316 - -
Cca01g00175 324 SUPERFAMILY Homeodomain-like 37 115 IPR009057 -
Cca01g00175 324 MobiDBLite consensus disorder prediction 226 252 - -
Cca01g00175 324 MobiDBLite consensus disorder prediction 185 203 - -
Cca01g00175 324 Coils Coil 112 160 - -
Cca01g00175 324 SMART HOX_1 56 117 IPR001356 GO:0003677
Cca01g00175 324 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Cca01g00175 324 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Cca01g00175 324 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Cca01g00175 324 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Cca01g00175 324 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g00175 324 MobiDBLite consensus disorder prediction 170 184 - -
Cca01g00175 324 CDD homeodomain 58 114 IPR001356 GO:0003677
Cca01g00175 324 Gene3D - 52 120 - -
Cca01g00175 324 MobiDBLite consensus disorder prediction 1 29 - -
Cca01g00175 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 316 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00175 Cca-Chr1 1719383 1722425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00175 1 318 Homeobox Transcription Factor Family AT2G22430 48.817 8.97e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca01g00175 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00175 K09338 - gmx:100777924 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02103 09 46056277 46058597 Cca01g00175 01 1719383 1722425 PCT