Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00174 ATGAAGAAATCCTATAACCCCAAAACCTCCCAAAGCCGCTACGAATtccaccgtcagccgtcgcacgccggcttcggtccacgctccgtccaccgtccgccgcctccgcgcgattccggtccccgccccatccaccgtcccccgCAACTATGGAAGCcccgcccgctcccgccctcccgcccgcccgcGCCCTATTTTACGGTGGAGCTCGTCCTCGGCCGCCGCACCCTCCGCCGCGACGACGTGGAGGCGCTGATCGACGAATGCCAACAGAAGCCGGAGAGTTTCACGTTCTACCCCGTCGACCACCTCGCCGGCACGCTCAGCTATCAAAATTGGGACGCCGCGCGCGACGCTGCCGTCTTTTTCTGGGAGTCTCTTCTGGCGGAGAAGCACGACTTCGCGCCGGTGCTGAGGTCCAACGCCGCCGTGAAGGGTGATCTCGAGGGCCGCCTCCGGGCTCTGTTCACGGCGCACGTGAGGGAATTGATGACGGAAGGAAAGGAGGTGAAGCGTTGGGTGGCGGAGATTGATCGGTTGTCGGAGGAGATTGCGAGGGTTTCGGATTGTCTCGGTAAGCCCTCGGCTGTTGGTTTGTTCTACCGTTTTATGGAGAAGGAGAGAGGGCTCGTTGAAGAGAAGAGCCTCGCTGAGAGGAGGGTGAAAGAGTTTGAGTCTGCAATGGAGTGTGTGTTGAAGCATTTGgaggatgaggatgatggtgagagtagaggtgatggtgaggttgttgatgCTGTTCCTGTGTTTAGGTTTGATGGAGATTGTGATTGGAAGCGGATTCACTGCTTCATCAGCAGGGAGCGTCGGAGGCTTCAGGATGGATTGCCCATTTATGCATACCGGAGGGACATTCTTCAGGAGATACATCATCAACAGATAACGGTATTAATTGGAGAGACTGGTTCTGGGAAGAGTACACAGTTGGTACAGTTTCTGGCTGATTCTGGTGTAGGTTCTAAAGAATCCGTTGTATGTACCCAACCCCGCAAAATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGATGTTATAAAAGTCATTCAATCAAATGTTGTTCTGCGTTTTCATCCTCACATGAGTTTGAATCCAGGATAACATTCATGACGGACCACTGTTTATTGCAGCACTACATGAATGACAAGAATTTGTTTGGGATTTCGTGCATCATAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGACTTTGTTAAAGGATTTACTCTGTCGGAGGGTTCAAATGCGGCTTATCATTATGTCTGCTACTGCTGATGCAAAACAGCTATCTGATTACTTTTATGGCTGTGGAATTTTTCATGTGCTTGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTCCTGACTATGCAGGACAttctggttctgcttctgtttctgttgcctcatatgtttctgATGTTGTCAGAATGGCCACTCAGATTCACAAAACAGAGAAAGAGGGAACCATTCTGGCCTTTTTAACCTCTCAGATAGAAGTAGAATGGGCCAGTGAAAAGTTTGAAGCTCCCTCAGCAGTGGCTTTGCCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCGTGTTTTTCAAAGCTACCCTGGAAAGAGAAAAGTCATATTTTCAACAAATCTTGCAGAAACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGGTGGTTAAAGATAGCAGATTTGATCCTGGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAAAGCTCTGCTCGTCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTACGTGCTATAGACTGTACTCTGAAGCTGATTATCAGTCTATGGAATTAAATCAAGAGCCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTGTGGACGCTCCAAGTGCTAGCTCTATTGAGATGGCAATCAGGAATCTAATTCAGCTAGGAGCCATTGAAGTGACCAATAATGTTCATGAATTAACTTCTGAGGGTTGGTGCTTGGTTAGAATGGGAATTGAACCCAGGCTAGGTAAACTTATTCTTGGCTGTTTCAGGCATGGTTTAGGTAGAGAAGGGGTTGTCCTTGCTGCTGTGATGGCCAATGCCAGTAGCATTTTTTGCAGAGTTGGTAATGAATGTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGTCATTGTGATGGTGACCTCTTTACTCTTCTTTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGCATTAATGCCAAATCAATGAGGAGATGCCATGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACAGGACCTTGTTACTCCAAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTTATACTTTCCTCACTTGCTGAAAACGTAGCCATGTACTCTGGCTGCAATCAACTTGGTTATCAGGTGGCTCAAACTGGGCAACACATTCAACTACATCCAGCTTGTTCATTGCTTGTATTTGCTCAAAAACCAATTTGGGTGGTTTTTGGTGAGCTTCTTTCAATTTCTAATCAATATTTGGTCTGTGTAAGTGTGATTGACTTTCAATCGTTACACAATCTTTCCCCTGCTCCCATGTTTGATCGGAAATTGCAGATGAAGACACTAACTGGTTTTGGCTGTGTTCTTCTCAAGAGATTTTGTGGAAAAGCCAACAGTAATTTGCTTGGTCTTGTTTCACGGATAAGGAAAGCTTGCATGGATGAACGCATCTTCATTGAAGTGCTTGTTGAGCAGAATGAAATCCAGTTATATGCCGCTTCAAATGATATGGATACGGCCCTTGGATTAGTTAATGATGTCTTAGAATATGAGAGGAAGTGGTTACACACTGAATGTATGGAGAAGTATTTGTATCACGGGTCTGGTTCCTCTCCACCAGTAGCTTTGTTTGGGTCTGGTGGTGAAATAAAGCATCTGGAACTTGAGAAACGTTTCTTGAGTGTTGATGTGTGTCATCCAGACATTAATGCAATTGATGACAAGGAGCTCTTGATGTTTCTTGAGAACAATACCTCTGGTTACATCTGTGCTGTGCACAAATTTGCGAGCAATATGAAGGATGAGGATAAAGAAAAGTGGGGCAGGATAACATATCTGTCCCCTGATGCTGCCAGAAGGGCTACTGAGCTAGATGGATGGGAGTTTTGTGGATCCCCCTTGAAAATTGTTCCTTCACAGTTGGGAGGGGACAAAACATTTTCATTCCCTGCTGTTAAAGCAAAAATTTCTTGGCCTCGTAGGCTTAGCAAGGGATTTGCTGTAGTTAAATGTGATATGAAGGATGTCAATTTTATGTTGAGAGATTTCTATAACCTTGCAATAGGGGGAAGGTATGTTCAATGTCAAATTAGTAATAGGAGTACAGACAGTATTTTGATACGTGGACTTGACAAAGAGTTATCTGAAGTTGAAATATTGGATGTACTAAGAAGTGCTACAAGTAGAAAGATTTTTGATTTTTTTTTGGTGAGAGGGGATGCTGTTGGAAATCCACCATGCAGTTATTGTGAAGAGGCACTTCAAAAAGAAATTTACCCCTTTATGCCAAAAATAAACCCACATATTAGTTCTTGCCGAGTTCAGGTGTTTGCACCTGAGCCAAAAGATGCATACATGAGAGCTTTAATCACTTTTGATGGAAGATTACATTTGGAGGCAGCAAAAGCATTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGCCTTTCATGGCAAAAGATGAAGTGCCAGCAGTTGTTTCATAGCAACTTGACGTTTCCTGTTCCAGTGTATCGTGTGATTAAGGAACAACTGGATAAAGTACTGGCAAGCTTCAGAAATTTTAGAGGTCTTGAATGGAACCTGGACAAGACAGTTAATGGTTCCCACCGAGTGAAGATAACAGCCAATGCCACAAAGACAGTTGCAGAAGTTAGGAGACCTTTGGAAGAGCTATTGAGAGGGAAAACCATTGACCATGACAGCCTCACCCCTGCAGTTCTTCAGCTCATGTTTTCCAGGGATGGCTTTAATCTTAAAAGCTCATTGCAGCAAGAAACAGGAACTTACATTCTTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCGGACAAGGTTGCTTTGGTTCAGGAGAAGCTGATTCAATCACTCCTTTATCTCCATGAAGGAAAGCAGTTAGAAATTCATCTGAGAGGGAGGAATCTACCTCCTGATTTAATGAAGCGAATGATTAAGAATTTCGGGCCAGATCTCCGTGGACTGAAAGAGAAGGTACCTGGGGTGGATCTTTCACTCAATATACGCCGCCAGGTAATCAATTTTCATGGTAACAAGGAGTTGAAAGCAAGAGTAGATGAAATAATTTTTGACATTGCTCGTTCCAGCCATCATTTGGTTGAGAGAGTTGAAACTGGACCTAGCTGCCCGATTTGCTTGTGTGAGGTTGAGGATGGGTACTTGCTTGAAGGGTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCGGCTGTTAAAAACCAAGGCATTTTCCCAGTATGTTGTACTCACGCGGACTGTGGAGATCCCATTCTTCTGACAGATTTGAGATCTCTCTTATTTGATAAGTTGGAGGATCTTTTCAGAGCTTCTTTGGGAGCTTTTGTGGCAAAGAGTGGTGGAACTTACAGGTTTTGCCCCTCTCCTGATTGCCCCTCAATTTACCGAGTTTCAGGTCCTGATACTGCTGGTGAGCCATTTGTTTGTGGGGCCTGTTATTCAGAGACTTGTACCAGGTGCCACTTTGAGTATCATCCTTACATTTCATGCGAGAGATATAAAGAATTCAAGGAAGATCCAGACTCATCTCTGATAGAGTGGTGCAAAGGGAAAGATCAAGTTAGGTGCTGCCCGGCGTGTGGGTATGTAATTGAGAAGATAGATGGGTGCAACCACGTTGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGCTTAGAGTTCTATACTAGTAGTGATGAATGTTATAACCATCTGAGAGATATACACATGGCCATCATATAA 5223 0.4208 MKKSYNPKTSQSRYEFHRQPSHAGFGPRSVHRPPPPRDSGPRPIHRPPQLWKPRPLPPSRPPAPYFTVELVLGRRTLRRDDVEALIDECQQKPESFTFYPVDHLAGTLSYQNWDAARDAAVFFWESLLAEKHDFAPVLRSNAAVKGDLEGRLRALFTAHVRELMTEGKEVKRWVAEIDRLSEEIARVSDCLGKPSAVGLFYRFMEKERGLVEEKSLAERRVKEFESAMECVLKHLEDEDDGESRGDGEVVDAVPVFRFDGDCDWKRIHCFISRERRRLQDGLPIYAYRRDILQEIHHQQITVLIGETGSGKSTQLVQFLADSGVGSKESVVCTQPRKIAAKSVAQRVQEESSGCYKSHSIKCCSAFSSSHEFESRITFMTDHCLLQHYMNDKNLFGISCIIIDEAHERSLNTDLLLTLLKDLLCRRVQMRLIIMSATADAKQLSDYFYGCGIFHVLGRSFPVDIKYVPPDYAGHSGSASVSVASYVSDVVRMATQIHKTEKEGTILAFLTSQIEVEWASEKFEAPSAVALPLHGKLSSEEQFRVFQSYPGKRKVIFSTNLAETSLTIPGVKYVIDSGVVKDSRFDPGSGMNVLKVCWISQSSARQRAGRAGRTEPGTCYRLYSEADYQSMELNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSASSIEMAIRNLIQLGAIEVTNNVHELTSEGWCLVRMGIEPRLGKLILGCFRHGLGREGVVLAAVMANASSIFCRVGNECDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCHDTILELETCLEREQDLVTPSYWRWDPCMPSNHDKNLKRVILSSLAENVAMYSGCNQLGYQVAQTGQHIQLHPACSLLVFAQKPIWVVFGELLSISNQYLVCVSVIDFQSLHNLSPAPMFDRKLQMKTLTGFGCVLLKRFCGKANSNLLGLVSRIRKACMDERIFIEVLVEQNEIQLYAASNDMDTALGLVNDVLEYERKWLHTECMEKYLYHGSGSSPPVALFGSGGEIKHLELEKRFLSVDVCHPDINAIDDKELLMFLENNTSGYICAVHKFASNMKDEDKEKWGRITYLSPDAARRATELDGWEFCGSPLKIVPSQLGGDKTFSFPAVKAKISWPRRLSKGFAVVKCDMKDVNFMLRDFYNLAIGGRYVQCQISNRSTDSILIRGLDKELSEVEILDVLRSATSRKIFDFFLVRGDAVGNPPCSYCEEALQKEIYPFMPKINPHISSCRVQVFAPEPKDAYMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKMKCQQLFHSNLTFPVPVYRVIKEQLDKVLASFRNFRGLEWNLDKTVNGSHRVKITANATKTVAEVRRPLEELLRGKTIDHDSLTPAVLQLMFSRDGFNLKSSLQQETGTYILFDRHNLNLRVFGSPDKVALVQEKLIQSLLYLHEGKQLEIHLRGRNLPPDLMKRMIKNFGPDLRGLKEKVPGVDLSLNIRRQVINFHGNKELKARVDEIIFDIARSSHHLVERVETGPSCPICLCEVEDGYLLEGCGHLFCRLCLVEQCESAVKNQGIFPVCCTHADCGDPILLTDLRSLLFDKLEDLFRASLGAFVAKSGGTYRFCPSPDCPSIYRVSGPDTAGEPFVCGACYSETCTRCHFEYHPYISCERYKEFKEDPDSSLIEWCKGKDQVRCCPACGYVIEKIDGCNHVECKCGKHVCWVCLEFYTSSDECYNHLRDIHMAII 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00174 1740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 654 IPR001650 -
Cca01g00174 1740 SMART ultradead3 280 465 IPR014001 -
Cca01g00174 1740 ProSitePatterns Zinc finger C2H2 type domain signature. 1715 1736 IPR013087 -
Cca01g00174 1740 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1572 1655 - -
Cca01g00174 1740 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 105 1484 - -
Cca01g00174 1740 CDD SF2_C_RHA 460 622 - -
Cca01g00174 1740 Pfam AAA domain 296 432 IPR003593 -
Cca01g00174 1740 PANTHER ATP-DEPENDENT RNA HELICASE 1572 1655 - -
Cca01g00174 1740 PANTHER ATP-DEPENDENT RNA HELICASE 105 1484 - -
Cca01g00174 1740 Pfam IBR domain, a half RING-finger domain 1609 1663 IPR002867 -
Cca01g00174 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1529 1606 IPR013083 -
Cca01g00174 1740 SMART ibrneu5 1664 1728 IPR002867 -
Cca01g00174 1740 SMART ibrneu5 1595 1663 IPR002867 -
Cca01g00174 1740 MobiDBLite consensus disorder prediction 1 17 - -
Cca01g00174 1740 ProSiteProfiles Zinc finger RING-type profile. 1532 1574 IPR001841 -
Cca01g00174 1740 SUPERFAMILY RING/U-box 1531 1590 - -
Cca01g00174 1740 ProSitePatterns Zinc finger RING-type signature. 1548 1557 IPR017907 -
Cca01g00174 1740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 836 IPR027417 -
Cca01g00174 1740 Pfam Helicase associated domain (HA2) 675 769 IPR007502 GO:0004386
Cca01g00174 1740 SMART helicmild6 516 614 IPR001650 -
Cca01g00174 1740 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 838 917 IPR011709 -
Cca01g00174 1740 Gene3D - 270 458 IPR027417 -
Cca01g00174 1740 Gene3D - 1659 1738 - -
Cca01g00174 1740 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 398 407 IPR002464 -
Cca01g00174 1740 MobiDBLite consensus disorder prediction 29 59 - -
Cca01g00174 1740 CDD DEXHc_RHA-like 299 455 - -
Cca01g00174 1740 Gene3D - 459 633 IPR027417 -
Cca01g00174 1740 ProSiteProfiles TRIAD supradomain profile. 1528 1735 IPR044066 -
Cca01g00174 1740 SMART ha2_5 674 770 IPR007502 GO:0004386
Cca01g00174 1740 MobiDBLite consensus disorder prediction 1 59 - -
Cca01g00174 1740 Pfam Helicase conserved C-terminal domain 496 613 IPR001650 -
Cca01g00174 1740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 456 IPR014001 -
Cca01g00174 1740 Gene3D - 636 679 IPR042035 -
Cca01g00174 1740 SUPERFAMILY RING/U-box 1685 1732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00174 Cca-Chr1 1666238 1672786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00174 1547 1722 C3H Transcription Factor Family AT2G31770 25.414 4.30e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00174 K12818 - gmx:100810008 2848.15