Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00172 ATGGTTGATGGTTCAAGTGATGCTATTGCCACCATGAATCAGAAAACCAATTATGGTCCAATGCCTTCTCCTCTTCACTCACCAGTCTCAGTAACGTGGTTCCCTCCCCTCTTTGATGAAGATGATATGCATGATAAAAGCCATTTACTTATCATCATTGAGATTGTCATGGCTGCCACAGCATGCATAATTATTTTTCTCGCCACCTTGTACAAAATCCTAAGGTACTATTATTCAAGAAGATCCTACGTTAACAGAAGAAACCCCCCAATATTATTTGACATTCGTGGAGATTCTCCCTTTTCTGATGATGAGGAACAAGAACAAGAACAAGAGCAAGCCATTAGGCACCCCGTATGGTTCATCCACTCCGAGGGTCTCCAACAACCAATCATAGACTCCATCACAGTGTGCAAATACAGAAAAGATGAAGGGTTGGTGATAGAAACTGAGTGTGTTGTTTGCCTTGGTGAGTTTCAACATGAAGAGAGTCTCAAACTCTTGCCAAAGTGCAACCACGCTTTTCATGTACTTTGCATTGATACTTGGTTGAGATCGCACAAAACTTGTCCCTTGTGTCGTGCCCCTATTGTTCATGATGGTGCTGGTGAAGACTATGAGGCTGATTCAAGTGTTTCTAATATGAACCAAGGCATGGAAGAAAGTGTTTCTGATATGAATGAAGAAGATTCTAGTGATGATGGAATTCAAGTTTTGCTTGAGGTGAGTGACCATTATTCTTCAATTGTAATTGGATCTGATTCTGATGTTAGTACACAAGAATTTGAAGATGAAGAAGAACTCATGAAGAGGGTAGTGAAAGTTCAATCGATTACAAACTGCATCAGAGGCATATCTCAATGA 864 0.4039 MVDGSSDAIATMNQKTNYGPMPSPLHSPVSVTWFPPLFDEDDMHDKSHLLIIIEIVMAATACIIIFLATLYKILRYYYSRRSYVNRRNPPILFDIRGDSPFSDDEEQEQEQEQAIRHPVWFIHSEGLQQPIIDSITVCKYRKDEGLVIETECVVCLGEFQHEESLKLLPKCNHAFHVLCIDTWLRSHKTCPLCRAPIVHDGAGEDYEADSSVSNMNQGMEESVSDMNEEDSSDDGIQVLLEVSDHYSSIVIGSDSDVSTQEFEDEEELMKRVVKVQSITNCIRGISQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00172 287 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 236 IPR044675 -
Cca01g00172 287 Pfam Ring finger domain 151 194 IPR001841 -
Cca01g00172 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 201 IPR013083 -
Cca01g00172 287 SMART ring_2 152 193 IPR001841 -
Cca01g00172 287 PANTHER RING-H2 FINGER PROTEIN ATL54 24 236 - -
Cca01g00172 287 CDD mRING-H2-C3H2C2D_ZSWM2 151 194 - -
Cca01g00172 287 SUPERFAMILY RING/U-box 151 200 - -
Cca01g00172 287 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00172 Cca-Chr1 1659726 1660674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00172 44 198 C3H Transcription Factor Family AT1G72220 43.949 9.10e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00172 - - gmx:102667611 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02100 09 46018776 46020457 Cca01g00172 01 1659726 1660674 PCT