Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00169 ATGGATGTGTTTGAGTATCTGTTTGTGGTGATGGTAGTGGGAGCTCTATGCCATTCGAGCGTTGATGCACAAGGAGTCCCTCCCTTTGGCGTGCAAGCCATACGTGAAAACTGGAAAGTGACATTGATCGTCACCTTCTCCTTTTTGTTGGTTGCCTTTATCTTCTTCCTCGTGTTTCGCTTTCAATCGCCTCGTTCAAGCCACGAGTGCAAAAACGAGGACACACCCAACAACAAGGTGATTGAAAACTGCCCCATCTTCGTCTACGCCACGGCGAAGGAGCTCAAATTAGGAAATGAGGCGATGGAGTGCACGGTGTGCTTGAGCGAGTTTGAAGACAAGGACACCATAAAGATGCTTCCAAAGTGTGCACATGTTTTCCATCAGCAATGCATTGATAACTGGCTACCCTCTCACATGACCTGCCCCATTTGTCGCCACAACCTCACTTCCGACACCATTCATACCCCATTCAACACCAATTAG 486 0.4815 MDVFEYLFVVMVVGALCHSSVDAQGVPPFGVQAIRENWKVTLIVTFSFLLVAFIFFLVFRFQSPRSSHECKNEDTPNNKVIENCPIFVYATAKELKLGNEAMECTVCLSEFEDKDTIKMLPKCAHVFHQQCIDNWLPSHMTCPICRHNLTSDTIHTPFNTN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00169 161 SUPERFAMILY RING/U-box 97 153 - -
Cca01g00169 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 154 IPR013083 -
Cca01g00169 161 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Cca01g00169 161 SMART ring_2 104 145 IPR001841 -
Cca01g00169 161 PANTHER RING-H2 FINGER PROTEIN ATL11 77 152 - -
Cca01g00169 161 PANTHER RING FINGER DOMAIN-CONTAINING 77 152 - -
Cca01g00169 161 CDD RING-H2_PA-TM-RING 103 146 - -
Cca01g00169 161 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00169 Cca-Chr1 1636652 1637168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00169 80 150 Rapid Response to Elicitors AT3G05200 54.930 9.29e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00169 K10664 - gmx:100804862 139.813