Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00161 atggagattttcacattcatcctgCGCAAATCCGGCGACAAATGGACGGCAAAGCAATATTCCGGCGACATTGAGGAGTCGGCTCCGTCCACCTTTGAGATTCAGAGGAAACTCGTTAAGGCTGCTGACGCCGCCGACTCCTCCGCTGCCGTTCGGACCTCTTTCTCCGTCGTTTCACCTTCCTCTGCCATTTTCCAGGTGGTTGTGGGTGGTGCAGGAATAGTTGTAGGTGGTGTGgctgcagcagcagctgctcctgctgcgtctaaagaggctgctccggctgcAGAGAAGAAGGAAGAAAAAGTGGAGGAAGAAGAGGATGATGATGATTTGGGATTGTCACTCTTTGATTAA 357 0.4062 MEIFTFILRKSGDKWTAKQYSGDIEESAPSTFEIQRKLVKAADAADSSAAVRTSFSVVSPSSAIFQVVVGGAGIVVGGVAAAAAAPAASKEAAPAAEKKEEKVEEEEDDDDLGLSLFD 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00161 118 MobiDBLite consensus disorder prediction 85 118 - -
Cca01g00161 118 Pfam 60s Acidic ribosomal protein 37 117 - -
Cca01g00161 118 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 118 IPR044252 GO:0003735|GO:0005840
Cca01g00161 118 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 118 - -
Cca01g00161 118 MobiDBLite consensus disorder prediction 102 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00161 Cca-Chr1 1574224 1577656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00161 1 69 Cytoplasmic Ribosomal Protein Gene Family AT4G25890 55.072 1.13e-24 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00161 K02942 - cpap:110811092 95.5153