Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00157 ATGTTGGGGGAAGAAGGGAAGGAGAAAGCCACCGGTGTTGCATGGAAAACCTATTCCCGTTCGGTTTCGTGGACTGATAGGTCTCCTAACAGCCGCAAGCCACCAACAAATAGCAAACCAAGATCACTTTTGCCACCTCTTCAGCCTCTCTCAATCAACAAGCGCAGCGTGGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACTCCAAGAGGCTCCATCAGAGCTTATGATTCAAGTCAACCCACCAAGGATTTTCTCTTCAAGAGGGACAAATTGGCCTTCTTTGACAAGGAGTGTTCCAGAATTGCTGAGCATATATACTTGGGGAGTGACACAGTGGCCAAGAACCATGAACTCCTCATGCAGAACGGAATCACTCACGTGCTCAACTGTGTTGGCTTTGTTTGTCCCGAGTATTTCAAAGGTGATTTTGTGTACAAGACCCTTTGGTTGCAGGATAGTCCAACGGAGGACATCACAAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTCGGGAGCAAGGTGGACGTGTCCTTGTCCATTGCTGCCAAGGGGTTTCTCGATCTACAACTCTTGTGATTGCTTATCTGATGTGGAGAGAGGGACAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCTGTGACCAACCCAAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAAAGGGTACATGCTATGCCTGCAAGTCCAAATTCTATTCTCAGGATGTACCGGATGGCTCCTCACTCACCCTATGACCCTCTCCATCTGGTCCCCAAAATGGTAAACCAGCCAGGTGCACAAGCTCTTGATTCTCGTGGGGCCTTCATTATTCATGTTCCTTCTGCTATTTATGTTTGGAAGGGGAAACATTGTAACAAGGTGATGTCATGCAATGCAAGGAGTGCAGCCTTTCAGGTGATCCGTTATGAGAGGGCAAAGGGTCTGATTCTGAGCATCCAAGAAGGTGAAGAACCACCAGGGTTTTGGATTGCTCTTTCTGATTCTGAGAAAGGAGGGGTCATTGAGGAACCAGTTTTGTTGCCCTCTGAAGGCATGGAGAGTGCTGAGCCAGTTGGTTCAAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTTCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCCTTGTCTGATACAGTATCAGAAACTTGCCTTCCTGCTAGAGAACACGGTTGGGCAAAACTGAGGCGAAAGTTTGCTAGTGGATTGCTCACATCCCCTAAATGGAACTGTGATGATGCTAATTCAGCCCCATGCAATGATCAATCCAGTGCAACTGTTGAAGCTGAAAAACAACATTCTGCAGATGAGCCCTTGTCACCATCATCAATTCATCCCTGTGGTTCGCCGGATTCCTTTGAATGCTATCCAGATGAAGCCATGAATTTCTCCATTCCTGCTGTTGCTTCACCACTGCCATCGAATCCTTTTCCATGTTTTATAAGCTGCAGTCCAAAATTCAATTCCAAGTCACCAACACTTTCACCTTCAAGTTCTGATTATGCCAGTTCATTTACTTTTTCACCTTCCTCTACCAACTGGTCCGACTTGTCTTTCGTGTCTTCTCGGCAGCCATCACCATCTGGCCTTGAATCAACTGAACCCTTTTATGCTAAAGATGCATCTTTCTCAGAAAGTTCCTCTTTACTTCACAAAGAAGTTGTGTCTTCACCCTCGGAGACTTTGTCGGCTAATCACACATTCGGAGGGACAAACTCCAACTTGCAACTGAAAGGTTCTTTCCTCTCCATTGCTGAGCGAAGAGGGAGTAATCCACCACCTCTGAAGTTGCCATCCTCAGCCAGTGAATCCTCTCACATCCCCAACAACCTGTTCAGGTGA 1926 0.4621 MLGEEGKEKATGVAWKTYSRSVSWTDRSPNSRKPPTNSKPRSLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIRAYDSSQPTKDFLFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLMQNGITHVLNCVGFVCPEYFKGDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTTLVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGAQALDSRGAFIIHVPSAIYVWKGKHCNKVMSCNARSAAFQVIRYERAKGLILSIQEGEEPPGFWIALSDSEKGGVIEEPVLLPSEGMESAEPVGSRKVDAYDLDFEIFHKALAGGVVPPFSLSDTVSETCLPAREHGWAKLRRKFASGLLTSPKWNCDDANSAPCNDQSSATVEAEKQHSADEPLSPSSIHPCGSPDSFECYPDEAMNFSIPAVASPLPSNPFPCFISCSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESTEPFYAKDASFSESSSLLHKEVVSSPSETLSANHTFGGTNSNLQLKGSFLSIAERRGSNPPPLKLPSSASESSHIPNNLFR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00157 641 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 16 632 - -
Cca01g00157 641 MobiDBLite consensus disorder prediction 443 472 - -
Cca01g00157 641 MobiDBLite consensus disorder prediction 443 457 - -
Cca01g00157 641 MobiDBLite consensus disorder prediction 623 641 - -
Cca01g00157 641 Gene3D Severin 258 354 IPR029006 -
Cca01g00157 641 ProSitePatterns Tyrosine specific protein phosphatases active site. 190 200 IPR016130 GO:0016311|GO:0016791
Cca01g00157 641 MobiDBLite consensus disorder prediction 22 52 - -
Cca01g00157 641 SUPERFAMILY Actin depolymerizing proteins 252 350 - -
Cca01g00157 641 CDD DSP 107 241 - -
Cca01g00157 641 SMART dsp_5 106 245 IPR020422 GO:0006470|GO:0008138
Cca01g00157 641 MobiDBLite consensus disorder prediction 22 38 - -
Cca01g00157 641 PANTHER MKPA PROTEIN 16 632 - -
Cca01g00157 641 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 248 IPR029021 -
Cca01g00157 641 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 165 226 IPR000387 GO:0016311|GO:0016791
Cca01g00157 641 MobiDBLite consensus disorder prediction 613 641 - -
Cca01g00157 641 Gene3D Protein tyrosine phosphatase superfamily 86 248 IPR029021 -
Cca01g00157 641 Pfam Dual specificity phosphatase, catalytic domain 114 244 IPR000340 GO:0008138|GO:0016311
Cca01g00157 641 ProSiteProfiles Dual specificity protein phosphatase domain profile. 106 248 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00157 Cca-Chr1 1536688 1539659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00157 28 142 Protein tyrosine phosphatase (PTP) family AT3G55270 51.200 5.04e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00157 - - gmx:100775448 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00157 01 1536688 1539659 Cca01g00157 01 1536688 1539659 ECH
Cca09g02082 09 45862803 45863813 Cca01g00157 01 1536688 1539659 PCT