Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00152 ATGGGAAACAAAGGTGGTTTTTTCCGTTATGCAGATGGTGTTGACAAATTGCTATTACTGTTGGGGAGTTTGGGTTGCATTGGAGGTGGCCTACAAACCCCTATCACAATGCTTGTTCTTGGTAATTTGATAGATGATTATGCTGGTGGTGGTGGATCAGAACATTCTGTGCCAAACCATGTTATAGACAAGTACGCTCTAAGGCTGCTAGGTGTTGCCATTGTGGTTGCTTTATCGTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAAAGACAAACTTCTCGCATGAGAACTGAATATCTTAAGTCGGTCCTAAGGCAAGAAGTTGGTTTCTTCGACAACCAAACTGACTCTTCCACAACTTTCCAAGTTATTTCCACCATTACTTCTGATACTCAAACAATCCAAGATACCATGGCTGATAAGGTGCCAAATTGTCTGGTTCATCTCTCAGCATTTTTCTCTAGCTTTGTAGTGGCATTCTTCCTTTCTTGGAGGCTTGCATTAGCTGCTTTTCCATTTTCAGTCATGATGATCATGCCAGCAATCATATTTGGGAAGACCATGAAAGAACTGGGACATAAAATGAAGGATGCATACGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCATCGATTCGCACTGTTTATTCATATGTTGGTGAGAAGCAAACACTAAAAGCCTTCAACTCAGGTCTTCAAAAAAGCATGGAGATTGGCATAAAACAAGGTCAAACAAAGGGAGTAATAATTGGTAGCATTGGTTTGCTATATGCTACATGGGCATTCCAATCATGGGTTGGTAGTGTTCTGGTCAGGACAAAAGGAGAAAGTGGTGGCCCTGTGTTTTGTGCTGAGATATGCATCATTTGGGGAGGACTGTCCCTGATGAGTGCACTTCCAAATCTTGGTTTCATATTAGAGGCAACAACAGCTACTACTCGGATTTTCGAGATGATTGATCGAGTGCCAGCCATAAATTCTTATAAAGAAAAAGGAAAGGTCTTAACACATACAAGAGGAGAGATCACATTTAACGATGTTGAGTTTAGTTACCCATCAAGGCCAGATCAACCGATTCTCCAAGGACTCAATCTGAAAGTGCAGGCTGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCTACTATCATCTCTTTGCTTGAAAGATTTTATGATCCTGTGTATGGTGAGATATTGCTTGATGGATATGATATACAGACACTCCATCTTAAGTGGTTAAGGTCCCAAATGGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTATAAGTGCGGCAAAGGCAGCAAATGCTCATGATTTCATTGTTAAACTTCCTGATGGATATGAAACTCAAGTCGGACAATTTGGAGCTCAGTTGTCTGGAGGGCAAAAGCAAAGGATTGCTATTGCAAGGGCTTTAATAAGAGAACCTAAAATCCTACTACTTGATGAAGCCACAAGTGCTTTGGATTCACAGTCCGAAAGAATAGTGCAGGATGCCCTTGATAAGGCTTCTAGAGGGAGGACAACAATCATCATAGCACATCGCCTTTCCACAATTCGCAAGGCTGATTCAATAGTAGTTCTTAAATCAGGAAGAGTGATTGAATGTGGTTCCCATGATGAACTACTCCAACTGAACAATGGACAAGGAGGGACTTACAGAAAAATGCTGCAACTACAACAAGCAACAAATCAAAACGAAAATGCATTGCCACAAATAAACAAGAGCCCCTTAGCGATGGTAAATCTAACAGGTTCAAGTACAAGCCGGCAAAATAGCCCAATTCACCATGCATTTAGTTCAACACAAGCATTTAGTCCCATATATTCAATCAGTGTTGCAGGGTCTAGTTGTGATGACTACAGCAGCGAAAATTTGGAGAAATCTTCACATGCAAGTTTCTCCCAGTGGCGTTTACTAAGAATGAATGCCCCTGAGTGGAAACATGCTTTGCTTGGGTGTTTAGGGGCCATTGGCTCTGGAATATGTCAGCCAATTTACTCCTTTTGCTTAGGAATAGTTGCATCAGTTTACTTTATAAAAGATAACTCTGTCATCAAATCAGAAATAAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTCAACTTCATTTCAGGCCTCCTTCAACATTACAATTTTACCATTATGGGAGAGCACTTGCTAAAAAGGGTGCGAGAAAATTTGCTGGAGAAGGTGCTGACTTTTGAGATGGGATGGTTTGATCAAGAGGAGAACAGCAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTTCGATCTCTTGTCGCAGAAAGAATGTCACTGTTAGTTCAGGTTTCTGTTATGGCTTTGTTGGCTTTTGTACTCAGTTTAGTTGTCACATGGAGGGTGTCTATTGTCATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAGTATGGCAGGCAAAGCAAGAAGGGCTCAAAGAGAGGGTAGTCAACTAGCAATGGAAGCTACCACCAACCACAGGACTATTGCTGCATTCTCATCTGAGAAAAGGATTTTGAATTTGTTCAGAACTGCTATGGAAGGTCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCTGGTTTCATATTGTCAGCTTCATATTTTGTAACCACAGCATCTATAACTCTGACTTTTTGGTATGGAGGCCGGTTATTGAATCAAGGACTGGTGAAATCAAAACCTCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCTGAGACAGCTAGCACAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCAATACTGGATAGGAAAACTCAGATTGAACCGGAAGATCCTAGACATAGAAAGTTCAAAAATACTATGAATGGCCATATAAAACTGAGAGATGTCTTTTTTTCGTACCCGGCAAGGCCAGATCAAATGATTCTCAAAGGCCTCAGTCTTGATATTGAAGCTGGCAAAACAGTTGCATTAGTGGGACAAAGTGGCTCGGGAAAATCCACCATCATTGGATTAATTGAAAGATTTTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGACATAAGGGAATTTAACTTGAGAAGTTTGAGATCACGTATTGCCTTGGTGAGTCAAGAGCCTACCCTCTTTGCAGGAACTATACGTGATAACATTGTGTATGGCAAAAAGGATGCATCAGAAGATGAGATAAGAAAGGCAGCACGTCTTTCAAATGCTCATGAGTTTATAAGTTCAATGAAAGATGGTTATGATACTTACTGTGGAGAGAGAGGAGTGCAACTATCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTCGAGCAGTGCTTAAGGACCCTTCAATCCTTCTGCTAGATGAGGCAACAAGTGCTTTAGACAGTGTGTCAGAGAATCTGGTGCAGGAAGCATTGGAGAAAATGATGGTTGGAAGAACGTGTGTAGTTATAGCTCACCGTTTGTCAACAATACAAAGTGTTGACACCATAGTCGTGATTAAAAATGGGAAGGTGGTGGAACAAGGCTCGCACAAAGAGTTATTGAGCATGGGATCAAACGGAGCTTATTACTCCTTGACTAGGCTACAACATGGCCACCTAACTTGA 3738 0.4147 MGNKGGFFRYADGVDKLLLLLGSLGCIGGGLQTPITMLVLGNLIDDYAGGGGSEHSVPNHVIDKYALRLLGVAIVVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDNQTDSSTTFQVISTITSDTQTIQDTMADKVPNCLVHLSAFFSSFVVAFFLSWRLALAAFPFSVMMIMPAIIFGKTMKELGHKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTLKAFNSGLQKSMEIGIKQGQTKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATTATTRIFEMIDRVPAINSYKEKGKVLTHTRGEITFNDVEFSYPSRPDQPILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHLKWLRSQMGLVNQEPILFATSIRENILFGKEGASMEAVISAAKAANAHDFIVKLPDGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERIVQDALDKASRGRTTIIIAHRLSTIRKADSIVVLKSGRVIECGSHDELLQLNNGQGGTYRKMLQLQQATNQNENALPQINKSPLAMVNLTGSSTSRQNSPIHHAFSSTQAFSPIYSISVAGSSCDDYSSENLEKSSHASFSQWRLLRMNAPEWKHALLGCLGAIGSGICQPIYSFCLGIVASVYFIKDNSVIKSEIRLYSSIFCCIAVVNFISGLLQHYNFTIMGEHLLKRVRENLLEKVLTFEMGWFDQEENSSAAICARLATEANLVRSLVAERMSLLVQVSVMALLAFVLSLVVTWRVSIVMIAMQPLIIACFYSKNILMKSMAGKARRAQREGSQLAMEATTNHRTIAAFSSEKRILNLFRTAMEGPKKESIKQSWISGFILSASYFVTTASITLTFWYGGRLLNQGLVKSKPLLQVFLILMGTGRQIAETASTTSDIAKSGRAISSVFAILDRKTQIEPEDPRHRKFKNTMNGHIKLRDVFFSYPARPDQMILKGLSLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIREFNLRSLRSRIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKDPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDTIVVIKNGKVVEQGSHKELLSMGSNGAYYSLTRLQHGHLT 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00152 1245 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524
Cca01g00152 1245 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524
Cca01g00152 1245 Gene3D - 987 1243 IPR027417 -
Cca01g00152 1245 SMART AAA_5 1028 1214 IPR003593 -
Cca01g00152 1245 SMART AAA_5 373 559 IPR003593 -
Cca01g00152 1245 CDD ABC_MTABC3_MDL1_MDL2 346 587 - -
Cca01g00152 1245 Pfam ABC transporter 1019 1168 IPR003439 GO:0005524
Cca01g00152 1245 Pfam ABC transporter 364 513 IPR003439 GO:0005524
Cca01g00152 1245 Gene3D - 344 620 IPR027417 -
Cca01g00152 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Cca01g00152 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 319 - -
Cca01g00152 1245 CDD ABC_MTABC3_MDL1_MDL2 1001 1240 - -
Cca01g00152 1245 Gene3D ABC transporter type 1, transmembrane domain 69 974 IPR036640 GO:0005524|GO:0016021
Cca01g00152 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Cca01g00152 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 346 582 IPR003439 GO:0005524
Cca01g00152 1245 SUPERFAMILY ABC transporter transmembrane region 665 985 IPR036640 GO:0005524|GO:0016021
Cca01g00152 1245 Pfam ABC transporter transmembrane region 27 277 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00152 1245 Pfam ABC transporter transmembrane region 679 944 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00152 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00152 1245 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016021
Cca01g00152 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1240 IPR027417 -
Cca01g00152 1245 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1242 IPR039421 -
Cca01g00152 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 286 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00152 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 587 IPR027417 -
Cca01g00152 1245 PANTHER OS04G0481700 PROTEIN 11 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00152 Cca-Chr1 1492587 1499550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00152 20 591 Calmodulin-binding Proteins AT2G36910 36.222 6.13e-104 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00152 K05658 - gmx:100804664 2214.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00152 01 1492587 1499550 Cca01g00152 01 1492587 1499550 ECH