Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00151 ATGGGAGTCCGGTTAGACCCCAGAGCGCAGGAGTTCAGACCCACCACCTCCATACAATGGTACCCTCTCCCCCCGCCGCCGCCGCACCTCTCCCTCTCCGCCACCTCCACCCGCTCCCTCCTCCTCACCCCGGTCCCCCCCGCCTCCGAGTCCGCCCTCCTAAGCCACCTCCAGCTGTTCGGCCAAGTCCGCGCCCTCCAAACCGAAGCCCTCCGCCACGGCATCCTCACCGTCCACTTCTTTGACCTCCGCCATGCAGAGTCCGCCTTCACCGCCATCCGCATGCACCACTGGCCCCAATTCCCGGCCCGGCCCATCTCGGCCCACTACGTCCtcccctcctccaactccatccccatccccatccccGACGCCCACAACCAAGGCACCCTCGTCCTCTTCAACTTAGACCCCTCTCTCTCCGCCCAACACCTCCGTCGCCTCTTCCAACCTTTCGGTCCCATAAAGGAATTGAGAGATACTCCATGGAAAAAGAACCAAAGATTCGTCGAGTTCTTCGACGTCAGAGACGCTGCCACCGCTTTGAAACAGATGAACGGTAAGGAAATTCACGGGAAGCCTCTCGTTATTGAGTTCAGCAGACCCGGTGGCCACACTCGCAGAGTCTTCACTCCTCCTCCTCCTCACAGTACCAACAAATCCTCCTCTTCCACCCGCCAACTTCAGCTTCAGGAGGagcctcagcctcagcctcagcctcagcctcagcctcagcctcagcGGAGCCCCAAGCAACAGCTTCCTAGAACTAGGCACTGGAAGGGGAAACAAGCCAAGAAACACGAAACTCGCTTTCTAATCAAAGAGGACGCCATTGTAGAGTCTGCTCCCAAAGATACTAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAACCACTGCATACACTGCAACGAGCAGATTGCAGACGACGACGACCAGCCTCTATCCTCCTATGACTTCCTCTACCTTCCCATTGATTTCAAGTATTTTTCCATTTCCATGCACTAA 1047 0.5148 MGVRLDPRAQEFRPTTSIQWYPLPPPPPHLSLSATSTRSLLLTPVPPASESALLSHLQLFGQVRALQTEALRHGILTVHFFDLRHAESAFTAIRMHHWPQFPARPISAHYVLPSSNSIPIPIPDAHNQGTLVLFNLDPSLSAQHLRRLFQPFGPIKELRDTPWKKNQRFVEFFDVRDAATALKQMNGKEIHGKPLVIEFSRPGGHTRRVFTPPPPHSTNKSSSSTRQLQLQEEPQPQPQPQPQPQPQRSPKQQLPRTRHWKGKQAKKHETRFLIKEDAIVESAPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADDDDQPLSSYDFLYLPIDFKYFSISMH 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00151 348 PANTHER TERMINAL EAR1-LIKE 1 21 250 - -
Cca01g00151 348 PANTHER TERMINAL EAR1-LIKE 1 250 341 - -
Cca01g00151 348 MobiDBLite consensus disorder prediction 199 268 - -
Cca01g00151 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 202 IPR000504 GO:0003723
Cca01g00151 348 PANTHER RNA BINDING PROTEIN 21 250 - -
Cca01g00151 348 SMART rrm1_1 130 198 IPR000504 GO:0003723
Cca01g00151 348 MobiDBLite consensus disorder prediction 212 234 - -
Cca01g00151 348 Pfam RNA recognition motif 2 288 341 IPR007201 -
Cca01g00151 348 SUPERFAMILY RNA-binding domain, RBD 127 210 IPR035979 GO:0003676
Cca01g00151 348 PANTHER RNA BINDING PROTEIN 250 341 - -
Cca01g00151 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 195 IPR000504 GO:0003723
Cca01g00151 348 Gene3D - 124 208 IPR012677 -
Cca01g00151 348 MobiDBLite consensus disorder prediction 235 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00151 Cca-Chr1 1477370 1480723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00151 130 201 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 5.81e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00151 - - ccaj:109797196 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00151 01 1477370 1480723 Cca01g00151 01 1477370 1480723 ECH