Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00151 | ATGGGAGTCCGGTTAGACCCCAGAGCGCAGGAGTTCAGACCCACCACCTCCATACAATGGTACCCTCTCCCCCCGCCGCCGCCGCACCTCTCCCTCTCCGCCACCTCCACCCGCTCCCTCCTCCTCACCCCGGTCCCCCCCGCCTCCGAGTCCGCCCTCCTAAGCCACCTCCAGCTGTTCGGCCAAGTCCGCGCCCTCCAAACCGAAGCCCTCCGCCACGGCATCCTCACCGTCCACTTCTTTGACCTCCGCCATGCAGAGTCCGCCTTCACCGCCATCCGCATGCACCACTGGCCCCAATTCCCGGCCCGGCCCATCTCGGCCCACTACGTCCtcccctcctccaactccatccccatccccatccccGACGCCCACAACCAAGGCACCCTCGTCCTCTTCAACTTAGACCCCTCTCTCTCCGCCCAACACCTCCGTCGCCTCTTCCAACCTTTCGGTCCCATAAAGGAATTGAGAGATACTCCATGGAAAAAGAACCAAAGATTCGTCGAGTTCTTCGACGTCAGAGACGCTGCCACCGCTTTGAAACAGATGAACGGTAAGGAAATTCACGGGAAGCCTCTCGTTATTGAGTTCAGCAGACCCGGTGGCCACACTCGCAGAGTCTTCACTCCTCCTCCTCCTCACAGTACCAACAAATCCTCCTCTTCCACCCGCCAACTTCAGCTTCAGGAGGagcctcagcctcagcctcagcctcagcctcagcctcagcctcagcGGAGCCCCAAGCAACAGCTTCCTAGAACTAGGCACTGGAAGGGGAAACAAGCCAAGAAACACGAAACTCGCTTTCTAATCAAAGAGGACGCCATTGTAGAGTCTGCTCCCAAAGATACTAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAACCACTGCATACACTGCAACGAGCAGATTGCAGACGACGACGACCAGCCTCTATCCTCCTATGACTTCCTCTACCTTCCCATTGATTTCAAGTATTTTTCCATTTCCATGCACTAA | 1047 | 0.5148 | MGVRLDPRAQEFRPTTSIQWYPLPPPPPHLSLSATSTRSLLLTPVPPASESALLSHLQLFGQVRALQTEALRHGILTVHFFDLRHAESAFTAIRMHHWPQFPARPISAHYVLPSSNSIPIPIPDAHNQGTLVLFNLDPSLSAQHLRRLFQPFGPIKELRDTPWKKNQRFVEFFDVRDAATALKQMNGKEIHGKPLVIEFSRPGGHTRRVFTPPPPHSTNKSSSSTRQLQLQEEPQPQPQPQPQPQPQRSPKQQLPRTRHWKGKQAKKHETRFLIKEDAIVESAPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADDDDQPLSSYDFLYLPIDFKYFSISMH | 348 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00151 | 348 | PANTHER | TERMINAL EAR1-LIKE 1 | 21 | 250 | - | - | |
Cca01g00151 | 348 | PANTHER | TERMINAL EAR1-LIKE 1 | 250 | 341 | - | - | |
Cca01g00151 | 348 | MobiDBLite | consensus disorder prediction | 199 | 268 | - | - | |
Cca01g00151 | 348 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 129 | 202 | IPR000504 | GO:0003723 | |
Cca01g00151 | 348 | PANTHER | RNA BINDING PROTEIN | 21 | 250 | - | - | |
Cca01g00151 | 348 | SMART | rrm1_1 | 130 | 198 | IPR000504 | GO:0003723 | |
Cca01g00151 | 348 | MobiDBLite | consensus disorder prediction | 212 | 234 | - | - | |
Cca01g00151 | 348 | Pfam | RNA recognition motif 2 | 288 | 341 | IPR007201 | - | |
Cca01g00151 | 348 | SUPERFAMILY | RNA-binding domain, RBD | 127 | 210 | IPR035979 | GO:0003676 | |
Cca01g00151 | 348 | PANTHER | RNA BINDING PROTEIN | 250 | 341 | - | - | |
Cca01g00151 | 348 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 132 | 195 | IPR000504 | GO:0003723 | |
Cca01g00151 | 348 | Gene3D | - | 124 | 208 | IPR012677 | - | |
Cca01g00151 | 348 | MobiDBLite | consensus disorder prediction | 235 | 249 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00151 | Cca-Chr1 | 1477370 | 1480723 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g00151 | 130 | 201 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 36.842 | 5.81e-08 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00151 | - | - | ccaj:109797196 | 623.239 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca01g00151 | 01 | 1477370 | 1480723 | Cca01g00151 | 01 | 1477370 | 1480723 | ECH |