Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00146 ATGGCATTTTCATTCACATTTATGTTCCTGTTCTTGCTTCTGGCCCCATCTGTGATCTATGCTTCTCCAGTTCAAGACCCTGAATTAGTGGTCCAGGAAGTCCAAAAGAGCATTAATGGTTCAAGGAGAAACTTGAGGTATCTTTCTTGTGGAACGGGGAACCCAATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAAAAGAACAGGAAGCGTTTAGCAGATTGTGGCATTGGTTTTGGTAAGCATGCGATTGGAGGGAAGGATGGTAAAATATATGTGGTGACTGACCCTAGTGATCACCCTGTGAAGCCCAAGGCAGGAACATTGAGATATGGTGTTATCCAAGAGGAGCCATTGTGGATCATTTTCAAGCATGACATGGTGATCAAGCTACACATGGATCTCCTCGTGAACTCTTACAAAACCATTGATGGAAGAGGAGCCACTGTCCACATTGCTGGAGGACCATGCATTAAAGTGCACAAGAAGACCAATATCATAATTCATGGCATACACATCCATGACTGCAAAAGGGGTGGCAGCGGATACGTGAGGGACTCTCCTAACAGAGTTAGCCTGAGTGCAAGATCGGATGGTGATGGGATTACAATCTTTAGTGGAAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAATTGTTTTGATGGCTTAATTGATGTCGTTCATGGGTCAACGGCCATTACCATTTCCAACAATTACATGACACACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCATTTAAAAATGACAAGAAAATGCAAGTCACAATAGCTTTCAACCATTTTGGAGAAGGGCTTGGGGGGAGAATGCCTAGATGCAGGTTCGGATACTTCCATGTGGTGAACAATGAATACACACACTGGCAACATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTACAGCCAAGGCAATAGATTTCTTGCTCCAGATGATGAAAACCACAAAGAGGTGACCAAACATTTTAAATCATCAGAGAGAGAGTGGAAGAAATGGAATTGGATGTCTGAAGGGGATCTAATGTTGAATGGAGCATTTTTCACACCTTCCGGGGCAGGAGCATCTGCTAGGTATGACAGAGCATCAAGCATGGCAGCACGACCACCTATGCTTGTTCCTTCAATGACAGCAGGGGCAGGAGTGCTTAGTTGCAGGAAGGGCAACTTATGCCACTAG 1209 0.4483 MAFSFTFMFLFLLLAPSVIYASPVQDPELVVQEVQKSINGSRRNLRYLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKHAIGGKDGKIYVVTDPSDHPVKPKAGTLRYGVIQEEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGATVHIAGGPCIKVHKKTNIIIHGIHIHDCKRGGSGYVRDSPNRVSLSARSDGDGITIFSGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSFKNDKKMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNEYTHWQHYAIGGSSSPTIYSQGNRFLAPDDENHKEVTKHFKSSEREWKKWNWMSEGDLMLNGAFFTPSGAGASARYDRASSMAARPPMLVPSMTAGAGVLSCRKGNLCH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00146 402 PANTHER PECTATE LYASE 4 398 - -
Cca01g00146 402 Pfam Pectate lyase 138 318 IPR002022 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Cca01g00146 402 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Cca01g00146 402 SUPERFAMILY Pectin lyase-like 37 395 IPR011050 -
Cca01g00146 402 Gene3D - 53 394 IPR012334 -
Cca01g00146 402 PANTHER PECTATE LYASE 18-RELATED 4 398 IPR045032 GO:0030570
Cca01g00146 402 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00146 Cca-Chr1 1429572 1432238 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00146 3 401 Polysaccharide Lyase AT5G63180 68.317 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00146 K01728 - gmx:100801136 759.985