Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00144 ATGGCATATCAAGCAGTTATGGAAATTCAAATTCTGTTACTATTTCTACTTTTTGTACTACCTTCCTGCATTTGCTCTTCCCCACTTCAAGATCCCGAATTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTGGCATTTCTTTCTTGTGGGACTGGGAACCCTATTGATGATTGTTGGAGGTGTGACCCCAGTTGGGAAAAGAACAGAAAGCGTCTAGCAGATTGTTCCATTGGGTTTGGTAAGCATGCAATTGGAGGGAGGGATGGTAAAATTTATGTGGTGACTGACCCTGGTGATCACCCTGTGAACCCCAAGCCAGGGACATTGAGATATGGTGTTATCCAAGAGGAGCCATTGTGGATCATTTTCAAGCGTGACATGGTGATCAAGCTGAAGCAAGAGCTTATGATGAACTCCTTCAAGACAATTGATGGTAGAGGAGCAAGTGTGCACATTGCTGGTGGACCTTGCATTACCATACAGTTTGTGACCAACATCATCATTCATGGGATCAACATCCATGACTGCAAGAGGGGAGGGAATGCCTACGTGAGGGACTCCCCTACACACTATGGGTGGAGGACTCTCTCGGATGGTGATGGGGTCTCAATCTTTGGTGGGAGCCATGTTTGGGTAGACCATTGCTCTCTCTCCAATTGCCGTGATGGGTTAATTGATGCCATTCATGGATCCACTGCCATCACCATATCCAACAACTACATGACCCATCATAACAAGGTCATGCTTTTGGGGCACAGTGATACCTTCAGTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCACTTTGGAGAAGGACTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTGGTGAACAATGACTACACCCAATGGAAAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGCCAAGGCAATAGGTTTCTTGCTCCTAATGACCATACCTTCAAAGAGGTGACAAAGAGGGAGAATGCTGGAGAGAGCAAGTGGAAGAATTGGAATTGGAGATCAACAGGAGATTTGATGTTAAACGGTGCGTTTTTTAGAGCATCAGGAGCAGGTGCATCTTCAAGCTATGCACGAGCATCAAGTTTGGCAGCAAAACCATCTTCCCTTGTGAGTTCCATCACAGCATCAGCTGGATCACTCAGATGCAGAAAGGGTTCGCGTTGCTGA 1221 0.4611 MAYQAVMEIQILLLFLLFVLPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPSWEKNRKRLADCSIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTQWKMYAIGGSAAPTINSQGNRFLAPNDHTFKEVTKRENAGESKWKNWNWRSTGDLMLNGAFFRASGAGASSSYARASSLAAKPSSLVSSITASAGSLRCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00144 406 PANTHER PECTATE LYASE 12 403 - -
Cca01g00144 406 SMART amb_all 132 329 IPR002022 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Cca01g00144 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Cca01g00144 406 Pfam Pectate lyase 138 323 IPR002022 -
Cca01g00144 406 Gene3D - 58 399 IPR012334 -
Cca01g00144 406 SUPERFAMILY Pectin lyase-like 43 400 IPR011050 -
Cca01g00144 406 PANTHER PECTATE LYASE 18-RELATED 12 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00144 Cca-Chr1 1414696 1417135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00144 9 406 Polysaccharide Lyase AT5G63180 77.475 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00144 K01728 - gmx:100816256 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00144 01 1414696 1417135 Cca01g00144 01 1414696 1417135 ECH
Cca01g00144 01 1414696 1417135 Cca03g00382 03 5962244 5964763 ECH
Cca01g00144 01 1414696 1417135 Cca11g01757 11 42227238 42229309 ECH