Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00140 ATGGCGTCTCTGCTACCTTGCGCGCCGAATATAGTCTCTGCTCCGTTCGCGAACCGGAGCGGCTTGAGCCGCTTCCCGCGCCGACCTCACTCCCACTCTTTCTCCGGTTCGACCAGACACTTTCTCCGCGGGTCGCTTTCCGTCGTCCGGTTCGGCTTCAAACCCGGGTTTTTGCCTGAACCGGATGACGCCGAAGGCCTCCTCAGGGAACTGTTTGGCCGAGCGGAGGGACTTCTCTACACGATTGCCGATGCCGCTGTTTCTTCCTCCGACGCGGTTGCACCAACCGCCGCCGCCGCCAAACAGAGCAACGATTGGCTTTCCGGAATTACGAATTACATGGAGACGGTTCTCAAGGTACTCAAGGATGGGCTTTCAACTTTGCATGTCCCATATGCCTATGGTTTTGCAATTATACTGCTCACAGTTCTCGTAAAAGCTGCTACTTTTCCATTAACCAAAAAACAGGTAGAATCTGCCTTGGCTATGCGAACTTTGCAACCTCAAGTAAAGGCTATCCAGCAGCGATATGCTGGAGATCAGGAAAGGATACAACTTGAAACTGCTCGGTTGTATAAACTAGCCAACATTAATCCTCTGGCAGGATGCCTACCTACACTCGCAACAATTCCAGTGTGGATTGGCTTATATCGAGCCCTTTCAAATGTGGCAGATGAGGGACTCCTTACAGAAGGCTTCTTCTGGATACCTTCTCTTGCTGGTCCAACTACAATTGCATCTCGTCAAAATGGCAGTGGTATCTCTTGGCTTTTCCCTTTTGTGGATGGTCACCCTCCCCTTGGATGGTCAGATACATTGGCTTACCTTGTCTTGCCTGTGTTGCTGGTCGTCTCTCAGTACATCTCTGTCCAAATAATGCAGTCATCACAGGCTAATGATCCGAACATGAAAAGTTCTCAAGCCTTGACCAAGTTTCTTCCATTAATGATTGGTTACTTTGCTCTCTCAGTTCCTTCTGGTCTTAGCCTTTACTGGTTAACAAATAATATATTGAGCACCGGACAACAAGTATGGCTTCAAAAGTTAGGAGGTGCTAAAAATCCTGTGAGGCAAGTCCCAGATGATATCATAAAGGATGAACTAACACAGGCTCAGAAGTCAATATTCCCAGATGATATCATGAAGGATGAACTAACACAGGTTCAGAAGTCAATATCTAAACTAAATTCCACACAAGTGGAAGAAGCCAAACAAAGTGAGAAAAAGTCAGAGGGACCACAACCTGGTGAACGATTTAGGCAAATAaaggagcaagaggcaaggagaaaacaacaaagagaagaagagaaaaggaaagcagcagaagcagCGGCTAGAGAAACTAAAGTACATGAGACACTTGAGAAAACAGTTGAAGAGGGAAATCAAAACGAAGGTGATTTGGATGAAAAACCTCTGTCTGTGAATTTAGATAATGATCCCTCCATATCTGGAGTAGTAAATGGGAATCCGTTGAGGAACGACTTGGAGGGAAATCAGAATTCTACATCTACATCTGAAACAGAAAATAATGAAGGTTCTGCTCAAGTCAACAGTGTTGAGATAAACGAGAAAAGTTTAGACAAGGAACCTAGAGAAGTTCTAACAACTGCAGCCACCACAAACAAACAACCTACTGCAGAAGATGCAGATCACATGGCACAGGATTAA 1671 0.4411 MASLLPCAPNIVSAPFANRSGLSRFPRRPHSHSFSGSTRHFLRGSLSVVRFGFKPGFLPEPDDAEGLLRELFGRAEGLLYTIADAAVSSSDAVAPTAAAAKQSNDWLSGITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQKLGGAKNPVRQVPDDIIKDELTQAQKSIFPDDIMKDELTQVQKSISKLNSTQVEEAKQSEKKSEGPQPGERFRQIKEQEARRKQQREEEKRKAAEAAARETKVHETLEKTVEEGNQNEGDLDEKPLSVNLDNDPSISGVVNGNPLRNDLEGNQNSTSTSETENNEGSAQVNSVEINEKSLDKEPREVLTTAATTNKQPTAEDADHMAQD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00140 556 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 134 348 IPR028055 -
Cca01g00140 556 MobiDBLite consensus disorder prediction 396 556 - -
Cca01g00140 556 Pfam 60Kd inner membrane protein 134 348 IPR001708 GO:0016021|GO:0032977
Cca01g00140 556 MobiDBLite consensus disorder prediction 477 522 - -
Cca01g00140 556 MobiDBLite consensus disorder prediction 401 474 - -
Cca01g00140 556 Coils Coil 422 447 - -
Cca01g00140 556 PANTHER OXA1 23 486 IPR001708 GO:0016021|GO:0032977
Cca01g00140 556 PANTHER BNAA09G28180D PROTEIN 23 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00140 Cca-Chr1 1362748 1369992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00140 71 437 Chloroplast and Mitochondria Gene Families AT2G28800 55.556 5.45e-132 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00140 K03217 - gmx:100802546 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00140 01 1362748 1369992 Cca01g00140 01 1362748 1369992 ECH