Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00136 ATGGATGTGCTAGATTTGTTCCTAGTTGCAACAAGCACCATAGGCTTCATTTGTGTGTGCAAAGCCCTCATCAAATTTCTCAAGTGGGTATGGGTGATGTTCTTGAGGCCACCAAAGGACCTCAAAGAATACGGTTCATGGGCCATGATAACCGGTTCCACCGATGGAATTGGCAAGGCCATGACCCTTGAATTGGCCTCCAAGGGACTTAACCTAATCTTGGTCGGTCGAAACCCTCTAAAGCTTGAAGCCACGTCCAAGGAAATAAGGGATCATGGGCACAATGTTGAGGTCAAGTTTGTGGTATTAGACATGCAAAAGGTTGGTGGGGTGGAAATGGTGAAGAGAATAGAGGAAGCAATAGAGGGTTTGGATATTGGTTTGGTTGTGAATGGTGCTGGCTTGGCTTACCCTTATGCTAGATTCTTTCATGAGGTGGATTTGGAGCTTATGGATGCTATTGTGAGAGTGAATGTTGAGGGAGCAACTTGGATCACAAAGGCAGTGATTCCCACTATGATCAAGAAGAAAAAAGGAGCAATAGTGAACATTGGATCTGGTTCCACAATTGTGCTTCCTTCGTACCCTTTAGTCGCTCTCTATGCTGCTTCAAAAGCTTACCTTGCAATGTTTTCGAGATGCATCAGTTTGGAATACAAACATCAAGGAATTGACATCCAATGTCAGGTTCCATTATTTGTGTCAACAAAGATGACCAGAATGAAGACATCACTTTTTGTACCATCGCCAGAAACTTATAGTAAAGCATGCACAAGATGTATTGGCTATGAAAAACTGGTTGTGCCTTATTTCCTCCATTCTGTGCAAGGCTTTCTCATCAAAGCCATTCCTGAAACATTTCTGGATTCTTATATGCTACGCTATTTTCTTTATTGGCGTGGAAGAGGACTCTCCAAGGACGCCAAAATTAAAGCATCAACAGCATCTAATTCTGAAGCAAATTAA 966 0.4255 MDVLDLFLVATSTIGFICVCKALIKFLKWVWVMFLRPPKDLKEYGSWAMITGSTDGIGKAMTLELASKGLNLILVGRNPLKLEATSKEIRDHGHNVEVKFVVLDMQKVGGVEMVKRIEEAIEGLDIGLVVNGAGLAYPYARFFHEVDLELMDAIVRVNVEGATWITKAVIPTMIKKKKGAIVNIGSGSTIVLPSYPLVALYAASKAYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTRMKTSLFVPSPETYSKACTRCIGYEKLVVPYFLHSVQGFLIKAIPETFLDSYMLRYFLYWRGRGLSKDAKIKASTASNSEAN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00136 321 PANTHER RH59310P 4 310 - -
Cca01g00136 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 188 216 IPR020904 GO:0016491
Cca01g00136 321 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 4 310 - -
Cca01g00136 321 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Cca01g00136 321 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Cca01g00136 321 PRINTS Glucose/ribitol dehydrogenase family signature 173 189 IPR002347 -
Cca01g00136 321 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Cca01g00136 321 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Cca01g00136 321 PIRSF 11-beta-HSD1 1 306 - -
Cca01g00136 321 Pfam short chain dehydrogenase 47 241 IPR002347 -
Cca01g00136 321 CDD 17beta-HSD1_like_SDR_c 45 286 - -
Cca01g00136 321 Gene3D - 41 270 - -
Cca01g00136 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Cca01g00136 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 IPR002347 -
Cca01g00136 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Cca01g00136 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 299 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00136 Cca-Chr1 1334456 1337356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00136 14 308 Lipid Metabolism Gene Families AT1G67730 49.158 5.32e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00136 K10251 - gmx:100816067 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00136 01 1334456 1337356 Cca01g00136 01 1334456 1337356 ECH
Cca09g02018 09 45263177 45266570 Cca01g00136 01 1334456 1337356 PCT