Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00132 ATGGGTTTATGTTCTCCTTTTCTTGTTACACTTCTTCTGCTAACATCATATGCGCTTTGTCAACTTGAAGAATTTATCAGTATTGACTGTGGAGGGACAAGTAACTACACGGATAAGAGCACAGGGCTTGCATGGATATCGGACTCTGGGATTATGAAACATGGCAAGCCAGTGGAGGTACAAAATCCTAGTGGAAACAAGGTTCAGTATCAGAGACGCAGAGACTTTCCTATAGACAACAGAAAATACTGTTATACACTTGGCACTGAGGAGAGAAGAAGGTATCTAGTGAGAGCAACGTTTCAGTATGGTAGCTTGGATGATGGAGACACATATCCTCAGTTTCAGCTCTATTTGGATGCAACAAAATGGGCTACTGTGTCAATATATGATGCCTCAAGAATTTATGTGAAGGAAATGATCTTCAGGGCACCCTCAAACTCTGTTGATGTTTGCATGTGCTGTGCCACCACTGGCTCTCCCTTCATATCTACCCTTGAGCTGAGGCCCTTGAATCTTTCTATGTATGCCACAGATTTTGAGGGCAGTTTCTTCTTGAAAGTGGCTGCAAGAATTAACTTTGGTGCTCCAAGTGAGGATGCTGTCAGGTATCCAGATGACCCATATGATAGAATTTGGGAGTCTGATCTTGTTAAAAGACAAAATTATCTTGTTGGGGTGGCACCAGGCACCGAAAGAATTAACACAACAAAGAAAATAGAAATAAAGACAAGGGAATACCCACCTGTTAAAGTGATGCAAACTGCAGTTGTTGGCACAAAAGGGTTGATTAGCTATAGACTAAACCTGGAAGACTTCCCTGGCAATGCTAGAGCTTATGCATATTTGGCAGAGATTGAAGATCTTCCCAAGAATGAGACTAGAAAATTCAAGTTGGAGCAACCTTACATAGCTGACTATAGCAATGCAGTGGTGAACATAGCTGAGAATGCCAATGGGAGCTACACTCTTTATGAACCAAGTTACATGAATGTGAGTCTGGAATTTGTGCTTTCATTTTCCTTTGTTAAGACCCGGGATTCCACTCGAGGACCTCTTCTTAATGCAATGGAAATAAGCAAATATGTGCAAATTGCTTCAAAGACTGACAAGCAAGATTCAAATTTTGTGAATGTATTTCGCTTCTTATCCACTGAAAGTGTCCTGAAGAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGAATGGGTGAATTGTAGTACAGCTACACCTCCAAGAATCACAAAGATAAACTTGTCAAGAAGGAATATGAAGGGTGAAATACCACGGGAGCTCAACAACATGGAAGCATTGACAGAACTGTGGTTAGATGGCAACTTGCTTACAGGACAACTTCCTGACATGAGCAATCTTATCAATCTAAAGATTGTGCATCTAGAGAACAACAAGTTGACTGGTCCATTACCATCTTACTTGGGTAGTTTGCCAAGTTTACAAGCATTGTTCATACAGAATAACTCGTTTAGTGGGGAAATACCATCAGGATTACTGTCAGGAAAAATAATTTTCAACTTTGATGATAATCCTGAACTACATAAAGGGAACAAGAAGCATTTTCATTTGATGCTAGGAATTTCTGTTGGAGTACTAGTGGTTCTATTAATATTGTTCTTAACAAGTTTGGTGCTATTGCTTAATCTGCGGAGAAAGGCATCTCAGCAGAAACGTGACGAGAAGGGTGTATCTGGACGCAGCAGCACTAGACCTTTAACTGGATACTCATTTGGTCGGGGTGGGAATTTAATGGACGAAGGTACTGCTTACTATATTACTCTCTCAGAGTTGAAAGAAGCTACTAATGATTTTTCAAGGAACATTGGAAAAGGAAGTTTTGGATCCGTCTACTATGGAAAAATGAAAGATGGAAAAGAGGTGGCAGTTAAGACTATGACTGATCCATCCAGCTATGGGAACCAGCAATTTGTAAATGAGGTAGCCCTCTTATCAAGAAttcatcacagaaacttggttcctctaattggatattgtgaagaagaatatcagcatattctggtttatgagtacatgcacaatggcactttaagggagtacattcatgAATGTTCAAATCAGAAGCAATTAGATTGGTTAGCTCGCCTTCGAATTGCAGAAGATGCAGCCAAAGGTCTTGAATACTTGCACACAGGATGCAATCCTAGTatcattcaccgtgacgtgaagacaagtaatattctcctagatatcaatatgagagcaaaagtgtcagattttggactctcaaggttagctgaggaagatttaactcacatatcaagtgttgcaaggggaactgtaggttacctggatcctgaGTACTATGCAAATCAGCAATTGACTGAAAAAAGTGATGTATACAGTTTTGGAGTTGTTCTGCTGGAATTGATATCAGGAAAAAAGCCTGTATCATCAGAAGACTATGGTCCCGAAATGAATATTGTTCACTGGGTATCTTAG 2475 0.3612 MGLCSPFLVTLLLLTSYALCQLEEFISIDCGGTSNYTDKSTGLAWISDSGIMKHGKPVEVQNPSGNKVQYQRRRDFPIDNRKYCYTLGTEERRRYLVRATFQYGSLDDGDTYPQFQLYLDATKWATVSIYDASRIYVKEMIFRAPSNSVDVCMCCATTGSPFISTLELRPLNLSMYATDFEGSFFLKVAARINFGAPSEDAVRYPDDPYDRIWESDLVKRQNYLVGVAPGTERINTTKKIEIKTREYPPVKVMQTAVVGTKGLISYRLNLEDFPGNARAYAYLAEIEDLPKNETRKFKLEQPYIADYSNAVVNIAENANGSYTLYEPSYMNVSLEFVLSFSFVKTRDSTRGPLLNAMEISKYVQIASKTDKQDSNFVNVFRFLSTESVLKNEGDPCVPTPWEWVNCSTATPPRITKINLSRRNMKGEIPRELNNMEALTELWLDGNLLTGQLPDMSNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNSFSGEIPSGLLSGKIIFNFDDNPELHKGNKKHFHLMLGISVGVLVVLLILFLTSLVLLLNLRRKASQQKRDEKGVSGRSSTRPLTGYSFGRGGNLMDEGTAYYITLSELKEATNDFSRNIGKGSFGSVYYGKMKDGKEVAVKTMTDPSSYGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLREYIHECSNQKQLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSSEDYGPEMNIVHWVS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00132 824 Pfam Malectin-like domain 28 361 IPR024788 -
Cca01g00132 824 SUPERFAMILY Protein kinase-like (PK-like) 592 813 IPR011009 -
Cca01g00132 824 Gene3D Phosphorylase Kinase; domain 1 586 682 - -
Cca01g00132 824 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Cca01g00132 824 PANTHER OS07G0107800 PROTEIN-RELATED 13 822 - -
Cca01g00132 824 SMART serkin_6 607 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00132 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Cca01g00132 824 PANTHER - 13 822 - -
Cca01g00132 824 Pfam Protein tyrosine and serine/threonine kinase 609 809 IPR001245 GO:0004672|GO:0006468
Cca01g00132 824 Gene3D Ribonuclease Inhibitor 367 520 IPR032675 -
Cca01g00132 824 SUPERFAMILY L domain-like 398 517 - -
Cca01g00132 824 ProSiteProfiles Protein kinase domain profile. 607 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00132 824 Gene3D Transferase(Phosphotransferase) domain 1 683 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00132 Cca-Chr1 1294242 1301032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00132 1 823 Receptor kinase-like Gene Family AT1G67720 69.613 0.0 1189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca01g00132 Malectin_like 3e-89 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00132 - - gmx:100807148 1530.38