Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00131 ATGTCTGTTGATGGAGAAACAAGCAGGGTCATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATTAGGATGAAAGAGCTGCGAAACATATGGCAACATGTCTTTAGAAAAAGGATACATGAGGCAAGAGAATTTGAAAGTTTTGAGAGTTTTGAGAACATTCACTTGATGAGAAATGGATCAGAGCAATCAGATGATGGGAACTTGTTTGCTGTGGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACTATGACAAAGAATGTTTGGATCCATCTTCCACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATACTAGATTTGATGAATGTGCCATGGCTGACCCGAGAGAATGTCGCTAGCCACTTGCAGAAATACAGGCTTTATTTGAGTAGGATTCAGAAAGAAAATGATCAAAGGTCTTCCTCAAGTGGAATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGCAAGTTTTGGTTTTCAGAACTCAGTAAACAAGCAACAAAATGATGTTCCAGTTGACAGCTACAATTTTTCAGATGGATCATTGCAACCGAAGAATGTGGAAACCAAAAGTCGTGAAGGTGAACCCAAGGGAATTATTCCACAGTCCACCATAGCAGAAAAAGGAAGGGCTTTGACCGGTAACATTGCTGACACAAATATGAGAGAGGGTTTCAGGGTTAGCCTAAATCAACCTTTTGTCCCTCTGGAGTCAGAAGGAAACCGTTCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACACCTGCAACTCAAAGAAGATCACAAGTCACTTGTTAATTTAGGGGATAACTTCAGCCAGTTGCCATTACAGGGTAAGCAGCATCATATCCAAGTTGATCAATCACAATCAATTGCTTCAATTAGTTCCACTCCCTCCATAACAGATGAAGAGGTTGCTGCTTGTATAGAACCAAAACCTTTATTTGCAGATTACAAGAATGATTATGCCACGTCTGTGTGTTCAATAGGGAATGCAGTAGTTGACACCTTTCCTATTCAACCTGGAAGCCTAGTGATGAATGATCAATCTTCAGAACCCATTTCCACTACAAATTCTGGCTTGAAAACACAGGGATATAATAATCTCAGTAGCACTTCTGATCTGGAAATTTACCAAAGAAACCTACTTTTGGACGAGGACTTGCATTTCTATTGGTTACAAGGTGAAAGCTATAATATGAACTTCGGTCTGCAGAATATAGGAATGTCTGAATATTAG 1353 0.3969 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFENIHLMRNGSEQSDDGNLFAVEDVTSTKKRKDADNKHYDKECLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGMKHSDFPSKDLASFGFQNSVNKQQNDVPVDSYNFSDGSLQPKNVETKSREGEPKGIIPQSTIAEKGRALTGNIADTNMREGFRVSLNQPFVPLESEGNRSVFDCSMPTQYSWTEVPHLQLKEDHKSLVNLGDNFSQLPLQGKQHHIQVDQSQSIASISSTPSITDEEVAACIEPKPLFADYKNDYATSVCSIGNAVVDTFPIQPGSLVMNDQSSEPISTTNSGLKTQGYNNLSSTSDLEIYQRNLLLDEDLHFYWLQGESYNMNFGLQNIGMSEY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00131 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 158 IPR006447 GO:0003677
Cca01g00131 450 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Cca01g00131 450 MobiDBLite consensus disorder prediction 198 217 - -
Cca01g00131 450 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 444 - -
Cca01g00131 450 Gene3D - 101 164 - -
Cca01g00131 450 MobiDBLite consensus disorder prediction 198 229 - -
Cca01g00131 450 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
Cca01g00131 450 SUPERFAMILY Homeodomain-like 103 162 IPR009057 -
Cca01g00131 450 SUPERFAMILY CheY-like 2 55 IPR011006 -
Cca01g00131 450 Gene3D - 1 97 - -
Cca01g00131 450 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 444 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00131 Cca-Chr1 1280142 1284591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00131 1 443 Response Regulator Gene Family AT1G67710 38.675 1.00e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca01g00131 Myb_DNA-binding 5.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00131 - K14491 gmx:100797421 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00131 01 1280142 1284591 Cca09g01742 09 41941711 41946472 PCT