Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00128 ATGGATAATGGTTGCTTCTCTTCCCCTCGACGTGATTTTCCTGCTGGCTTGAGAGTTCTTGTTGTGGATGATGATCCAACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAAGATGGATATGATATAGTGATCAGCGACGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCTTGTTGGGCTTGAGATGGATCTTCCTTTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTCATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATTAGGATGAAAGAGCTGCGAAACATATGGCAACATGTCTTTAGAAAAAGGATACATGAGGCAAGAGAATTTGAAAGTTTTGAGAGTTTTGAGAACATTCACTTGATGAGAAATGGATCAGAGCAATCAGATGATGGGAACTTGTTTGCTGTGGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACTATGACAAAGAATGTTTGGATCCATCTTTCACTAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATTAG 630 0.4 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPFIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFENIHLMRNGSEQSDDGNLFAVEDVTSTKKRKDADNKHYDKECLDPSFTKKARVVWSVDLH 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00128 209 CDD REC_typeB_ARR-like 19 133 - -
Cca01g00128 209 Gene3D - 17 188 - -
Cca01g00128 209 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Cca01g00128 209 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 209 - -
Cca01g00128 209 SUPERFAMILY CheY-like 16 150 IPR011006 -
Cca01g00128 209 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 209 IPR045279 GO:0009736
Cca01g00128 209 SMART REC_2 17 129 IPR001789 GO:0000160
Cca01g00128 209 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00128 Cca-Chr1 1268550 1270868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00128 13 209 Response Regulator Gene Family AT4G16110 57.073 1.88e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca01g00128 Response_reg 2.8e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00128 - K14491 ccaj:109803943 425.631