Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00116 ATGATTAATCGAGGGGGGAAAAAAAATCTGAGGAGGAGACAGACACGTTCCCCTCTACCTCATCACCCCTCTTTCCACCGCATCCAAAAGCTTCTACTTCACGCTGACATACTCTCTCTACAGTCTACACCCAAACCCAAACCCCTAACCTTCCCTTCCCATGTGCCTTCTCCACTCCTCCAAAACCCACCACTTCATAATTCCACTCCCACAATTACCATCTCCCGCAACCCAATCCCTCACCCCAACACCATGTACTTATCGGAGAAGCCGCGTCCCATCGACTTCTACAAGGAGGAGGGGGCGCGCGACATGATGATCGAGGTCGTCTCCAACGGCGACCTCcctccgccgccgccgctccaccccgcgccgcccccCATGATCCTCGGCGAGAGCAGCGGCGAGGACCCCGAGGTCGAGATCAAGGCGCCCAAGAAGCGCGCCGAGACCTGGGTTCAGGACGAGACGCGCTCCCTCATCGGCCTCCGCCGCGAGATGGACGCGCTCTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGCAGATTTCGGCCAAAATGAGGGAAAAGGGCTTCGATCGTTCCCCTACCATGTGCACCGATAAGTGGCGCAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGCGCCGGAAGCGGCTCTGCGAAGATGTCGTATTACAAGGAGATTGATGAGATCCTCAGAGAGAGGAGCAAGAGCGTGCAGTATAAGAGTCCCACTCCTCCGCCTAAGGTTGATTCCTTCATGCAGTTCGCTGACAAAGGTATTGACGATACTAGCATCTCTTTTGGACCTGTAGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAGGCTCCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCCGTTAAATGGGGTGATTATACAAGACGGATAGGTATTGATGGCACTCCAGAAGCCATCAAAGAGGCAATTAGGGCTGCCTTTAGGTTGAGAACTAAACGTACATTTTGGTTGGAGGATGAAGACCAGATTATCAGAAGTATTGACCGTGAAATGCCTATAGGAAATTACACTCTTCACCTTGATGAAGGAATGGCCATTAAATTGTGCCTCTATGATGAATCTGACCATATCCCTGTGCATACCGAAGATAAGATATTTTACACTGAAGATGATTACCGTGATTTTCTGACCCGCCGGGGTTGGATATGTCTGAGAGAATTTGACGGCTATAGAAATATTGACAATATGGACGATCTTCGACCTGGTGCCATGTACCGTGGTATGAGTTGA 1392 0.4892 MINRGGKKNLRRRQTRSPLPHHPSFHRIQKLLLHADILSLQSTPKPKPLTFPSHVPSPLLQNPPLHNSTPTITISRNPIPHPNTMYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPPPLHPAPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRAGSGSAKMSYYKEIDEILRERSKSVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWREAPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPIGNYTLHLDEGMAIKLCLYDESDHIPVHTEDKIFYTEDDYRDFLTRRGWICLREFDGYRNIDNMDDLRPGAMYRGMS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00116 463 MobiDBLite consensus disorder prediction 1 24 - -
Cca01g00116 463 Gene3D - 152 214 - -
Cca01g00116 463 ProSiteProfiles Myb-like domain profile. 144 208 IPR001005 -
Cca01g00116 463 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g00116 463 PANTHER - 89 462 - -
Cca01g00116 463 MobiDBLite consensus disorder prediction 44 87 - -
Cca01g00116 463 CDD GT1 150 215 - -
Cca01g00116 463 MobiDBLite consensus disorder prediction 60 82 - -
Cca01g00116 463 SMART sant 148 210 IPR001005 -
Cca01g00116 463 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 89 462 - -
Cca01g00116 463 Pfam Myb/SANT-like DNA-binding domain 151 236 IPR044822 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00116 104 462 Trihelix Transcription Factor Family AT3G25990 70.652 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca01g00116 Myb_DNA-bind_4 4.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00116 - - ccaj:109807736 947.577