Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00104 ATGGCGGCTGGTAGACATGGAGGTTATCGTGAGAACGAGTTTAGGGACCGTGAGTCGAATTTTGATGTTTCAAGGCGGGTTATTAATGATAGTTCTAAACAGGAGTATGATAGGGTGAGGAATGGTAGCCACGGTGTTGCAAGGGGTGTGAGCAGGGATGCAAGAGATGGAATTAGACTGAGAGAGAAAGATATTAGGGTGAGGGAAGCTGCAAATGGCAGTTATCGTTCATCTTCGAGTAAGAGTGACTCGGGCGGTAGTGGCGGTTGTAGTAGCGGGCTTGGTCCCAAACGATGTGGGTTTTCTGTTAAGGCTATGGATAAAGAGCCAGGTGAGCTTTCTAGTGAAAGTGGGTCTGATGATGGTATTGACTCAGGATCACAGGAAAAATACTGCGAGGGGTTTGGAACAGGTGGAGGAAATGGGGGACAATCTCTGCTAGAGAGGAAAAGAAAATTTTCACCAATAGTATGGGATCAGGACGAGAGGGAAGTCAATTTATTCAAACATAGGGTTGTAACAGCTGTAACTACTCTGCCTCTCTCACCTCCACTTGCAAGAGTCCAACAGTCACCTAATGTTGTTGGAACTCATCCTGTCAAAAATACAGAAGCTGAGATTCTCGAGTTACCAACTGTAACTAATCCTCCTTTGCTGTCTGAGTCAGACGAGGATGATGAGTCTGAATCTCCTGTAGGTTTGCATTCATTTGTGCTTGATCAGAGACGGGGTAACGAGCAGGAAGGCAAGCAACCTGAAAGTGAAGATTATATTCCAACTCGTAATATATCATCTTCTAGATGGGCAGCTGGAGACAACTCTTCTAGTGATGAAGGTGAAATCACTGATGACAAGGAAATTCTTAAGAGGAGGAAGCTATCTCCTGATCTGGGTATGAGAATAAGAAACAAGGTGTCGAGACTGGAGGAATGTAAAATAGAAGAGTTTGTAGGAGCTAGAGCCAAATCATCCGAATCTGAAGAAAGAGGTAGCCGTGGGAGATCGTCCAGTGGTGATGATCATCCTAGTATTGAGTCGGGTAAAGATGATTATATGGAGATTGATGGTCAAGGTAGCAGAAGTGAAACTAGTGGTTATCATTCAGATACAGATTCTGAAGATGATAGCAGAGGAACTCCTGACCGCCTGTTTCCGCTTCAAAGAGCTGTCAACATGCTTCAGGGGTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAGGATAGATGAAGGGACATATGGTGTTGTTTTTAGGGCCAAAGATAAGAAAAGTGGCAAAGTTGTGGCATTGAAAAAGGTGAAGATGGAGAAGGAAAAAGAAGGTTTTCCACTTACTTCTCTTAGGGAAATAAACATTCTTCTTTCCTTTCACCATCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAACCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGACTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTTTTAGAAGGTGTGAAGTACCTTCATGACAACTGGGTGCTTCATAGGGATTTGAAGACTTCAAACCTGCTTCTGAATAATAGAGGTGAACTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCGCCTGAACTTCTTTTGGGGACAAAACAGTATTCAACAGCTATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTGTTTAATGGGAAGACTGAATTTGAACAAATTGATAAGATTTTCAGAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGTCAAATTTGTCAAGAATCAGCTTCCAACTCTGGGTGGTTCTGGTATAATCTCCTGCGTAAAAAGTTCCCTGCAACATCATTCACTGGATCACCAGTTCTTTCTGATTCTGGATTTGATTTGTTGA 2034 0.4263 MAAGRHGGYRENEFRDRESNFDVSRRVINDSSKQEYDRVRNGSHGVARGVSRDARDGIRLREKDIRVREAANGSYRSSSSKSDSGGSGGCSSGLGPKRCGFSVKAMDKEPGELSSESGSDDGIDSGSQEKYCEGFGTGGGNGGQSLLERKRKFSPIVWDQDEREVNLFKHRVVTAVTTLPLSPPLARVQQSPNVVGTHPVKNTEAEILELPTVTNPPLLSESDEDDESESPVGLHSFVLDQRRGNEQEGKQPESEDYIPTRNISSSRWAAGDNSSSDEGEITDDKEILKRRKLSPDLGMRIRNKVSRLEECKIEEFVGARAKSSESEERGSRGRSSSGDDHPSIESGKDDYMEIDGQGSRSETSGYHSDTDSEDDSRGTPDRLFPLQRAVNMLQGCRSVDEFERLNRIDEGTYGVVFRAKDKKSGKVVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFEQIDKIFRILGTPNETIWPGFSELPRVKVKFVKNQLPTLGGSGIISCVKSSLQHHSLDHQFFLILDLIC 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00104 677 Gene3D Phosphorylase Kinase; domain 1 387 484 - -
Cca01g00104 677 Gene3D Transferase(Phosphotransferase) domain 1 485 670 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 49 70 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 211 283 - -
Cca01g00104 677 Pfam Protein kinase domain 403 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00104 677 SMART serkin_6 402 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00104 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Cca01g00104 677 PANTHER - 122 647 - -
Cca01g00104 677 CDD STKc_CDC2L1 396 643 IPR045267 GO:0004674|GO:0005524|GO:0006468
Cca01g00104 677 MobiDBLite consensus disorder prediction 318 382 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 257 276 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 241 255 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 8 42 - -
Cca01g00104 677 ProSiteProfiles Protein kinase domain profile. 402 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00104 677 MobiDBLite consensus disorder prediction 1 146 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 72 89 - -
Cca01g00104 677 PANTHER CELL DIVISION PROTEIN KINASE 122 647 - -
Cca01g00104 677 SUPERFAMILY Protein kinase-like (PK-like) 394 640 IPR011009 -
Cca01g00104 677 MobiDBLite consensus disorder prediction 318 356 - -
Cca01g00104 677 MobiDBLite consensus disorder prediction 366 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00104 Cca-Chr1 1032822 1037487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00104 393 633 Core Cell Cycle Gene Families AT5G10270 50.391 8.10e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Cca01g00104 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00104 K08818 - gmx:100793729 966.452