Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00102 aTGATGGTGTTGGCGAATTCTGTTACGAAACAGGTTTTTCCCGTAGACTACGAAACGGAGGTGTCGCAGCGTCTCGTAGAGGCTTCTCATTACGGCGACACCGAAACGGCGTTCGAGTGTATCGCGAGTCCGTTGGTGGACGTTAACTTCGTTGGAACGGTGTCGTTTAAGTCCAAAACGACGGAAATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAACTCGGCGTACGAGGAGTTCAAGACCGAGCTCACTGCTCTGTTCCTGGCCGCGCACACAGGGAATTTGACACTCCTGCGGAAGCTTCTGAATGTCGGAGCAAATGTAAATATAAGATTGTTCAGGGGATATGCCACAACAGCATCAGTGAGAGAAGGGCATCTAAAAGTATTGGAGGTTCTCATCAATGGTGGAGCGTCACAACTTGCATGTGAGGAGGCTTTATTGGAAGCATGTTACATGGGGAGGGCCAGATTTGCTGAACTACTCATGCAGTCCAGCATGATCCGTCCTCGGGTTGCAGTTCATGCCCTTGTCTCTGCTTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATAGGACCTTGCTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCATTATTCGCCGCTGTTGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGCGTGAGGCTTGATATCAAGGTGAAACTGGGGGCATGGTCGTGGGACACAGATACAGGAGAAGAATTTCGTGTTGGTGTTGGACTAGCTGAGGCTTATCCAATCACATGGTGTGCTGTGGAGTATTTTGAATCCACTGGTGCCATATTGCACATGTTGCTCAGCCATCTCTCTCCAAATAGTTTACACTTTGGGAGGAGTCTCTTGCACCATGCAATTATTTGTAACAATGAAAAGGCACTAACTACACTTCTAAACCGTGGTGCTGATGCAGAAGTGGTAGTGCAAACCACTGAAGAAACCAATGAACACCCTATTCACATAGCTGCACGGCTAGGGTCATGTAACATTCTTCAGTCGCTGATTAGTGGTGGTTGTAACTTGGACTCCAAAACAAAATCTGGAGACACGGCATTGATGATTTGCACAAGGCACAAACATGAGAAGTGCCTTGGAGTGCTAGCATCAGCTGGTGCTGATTTTGGGATGGTAAATTCATCTGGTCTCAGTGCAACTTCAATTGCAAACTCTGTTCAGTGGACTAAAGTCTTCCAAAAAGCACTTCTGGATGTAATCAGAGCCGGTAAGATTGTTAAATCAAGCAACCCCTATAGATTTTCCGCTTTGTTATTTGTGACTCGTGCAAATGATGTAGAGGGTTTGAAGAAACTCATTGAAAATGAGAACACCAATCTAGATGAGCAAAATGGAAATGGATTTTCAGCTGCTATGATAGCTGTTATTGGGGGTAACGTGGAATCTTTCAGGTTGCTTCTTTATGCTGGTGCTGATGTGACCAAGCTTGAAAACAAGTATGGTTTGACAGCACTTGAACTCATAGACATGAGCCCAAATGGTGAAATGTTCCACAACGTGATGCTTGAATATGCACTTCATAAGAGAGGCAATGGTTGTTCAATAGAGGTGAATCCTCTCCACCGTGCAGCATGTTATGGGGACATGAACATTGTTAAAAAACTAATAAAAGAAGGGTATGATGTAAATGCCTTTGATGATCAAGGATACACCCCTTTGATGCTAGCAGCAAGAGCATGCCGGCGTGAAATGTGTGAGCTTTTGATCTCGTGTGGAGCCAAATGTGATGTTGAAAATGAGAGACACGAGACAGCACTTTCCCTTGCAAGGCAAAATGGTGCAGAAAATGATGCTGAAAGCGTGATAATGGAAGAGCTAGCTCGAACACTAGTCTTGTGTGGTGCTCGTGTGAAGAAGCACACAAAGTGTGGTAAAGGTTCACCTCATGGTAAGTCACTGGTGATGGTTGGAGCTGCTGGAATCTTGCGTTGGGGAAAATCTAGTAAGAGAAACGTGATTTGTAGAGAGGCTGAGGTTGGACCTAGTGAGAAGTTTCGATGGAATCGTAGGAAGAAGTTTGATGTCGATGAGGGGGGAATGTTTCATGTGATTACTACGAAAAACAAGGAGGTGCATTTTGTGTGTGAAGGTGGGGTTGAAATGGCTGACTTGTGGGTGAGGGGGATTAGATTAGTGACTAGAGAAGCTATTTTTGGTCGAAGAGCTTATAACGTTTGA 2280 0.4522 MMVLANSVTKQVFPVDYETEVSQRLVEASHYGDTETAFECIASPLVDVNFVGTVSFKSKTTEIVLQDESPHRVNSAYEEFKTELTALFLAAHTGNLTLLRKLLNVGANVNIRLFRGYATTASVREGHLKVLEVLINGGASQLACEEALLEACYMGRARFAELLMQSSMIRPRVAVHALVSACCRGFVEVVDVLIKHGVDANAIDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVRLDIKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLSHLSPNSLHFGRSLLHHAIICNNEKALTTLLNRGADAEVVVQTTEETNEHPIHIAARLGSCNILQSLISGGCNLDSKTKSGDTALMICTRHKHEKCLGVLASAGADFGMVNSSGLSATSIANSVQWTKVFQKALLDVIRAGKIVKSSNPYRFSALLFVTRANDVEGLKKLIENENTNLDEQNGNGFSAAMIAVIGGNVESFRLLLYAGADVTKLENKYGLTALELIDMSPNGEMFHNVMLEYALHKRGNGCSIEVNPLHRAACYGDMNIVKKLIKEGYDVNAFDDQGYTPLMLAARACRREMCELLISCGAKCDVENERHETALSLARQNGAENDAESVIMEELARTLVLCGARVKKHTKCGKGSPHGKSLVMVGAAGILRWGKSSKRNVICREAEVGPSEKFRWNRRKKFDVDEGGMFHVITTKNKEVHFVCEGGVEMADLWVRGIRLVTREAIFGRRAYNV 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00102 759 ProSiteProfiles Ankyrin repeat profile. 343 375 IPR002110 GO:0005515
Cca01g00102 759 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
Cca01g00102 759 Gene3D - 13 170 IPR036770 -
Cca01g00102 759 PANTHER ANKYRIN DOMAIN PROTEIN 7 753 - -
Cca01g00102 759 ProSiteProfiles Ankyrin repeat profile. 82 114 IPR002110 GO:0005515
Cca01g00102 759 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Cca01g00102 759 ProSiteProfiles Ankyrin repeat region circular profile. 82 112 - -
Cca01g00102 759 SUPERFAMILY Ankyrin repeat 27 253 IPR036770 -
Cca01g00102 759 Gene3D - 540 663 IPR036770 -
Cca01g00102 759 ProSiteProfiles Ankyrin repeat profile. 306 338 IPR002110 GO:0005515
Cca01g00102 759 ProSiteProfiles Ankyrin repeat region circular profile. 582 614 - -
Cca01g00102 759 SUPERFAMILY Ankyrin repeat 306 635 IPR036770 -
Cca01g00102 759 Gene3D - 171 259 IPR036770 -
Cca01g00102 759 ProSiteProfiles Ankyrin repeat region circular profile. 549 581 - -
Cca01g00102 759 PANTHER ANKYRIN REPEAT-CONTAINING 7 753 - -
Cca01g00102 759 ProSiteProfiles Ankyrin repeat region circular profile. 480 507 - -
Cca01g00102 759 Coils Coil 457 480 - -
Cca01g00102 759 ProSiteProfiles Ankyrin repeat profile. 480 512 IPR002110 GO:0005515
Cca01g00102 759 Pfam Ankyrin repeats (3 copies) 536 612 IPR002110 GO:0005515
Cca01g00102 759 Pfam Ankyrin repeats (3 copies) 344 405 IPR002110 GO:0005515
Cca01g00102 759 Gene3D - 273 429 IPR036770 -
Cca01g00102 759 Gene3D - 430 539 IPR036770 -
Cca01g00102 759 SMART ANK_2a 343 372 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 480 509 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 173 202 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 549 578 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 376 405 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 82 111 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 446 476 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 219 248 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 582 611 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 306 335 IPR002110 GO:0005515
Cca01g00102 759 SMART ANK_2a 114 143 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00102 Cca-Chr1 1009231 1014432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00102 350 533 Ion Channels AT2G25600 29.319 8.37e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00102 - - gmx:100795638 1300.42