Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00100 ATGGATGTTGCTGAGCTCGAAGAAAATCTTTTTGCAGCAGGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGCAAGATATTGTCATTGTTTCCTTCTTTAGAAGCCGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTTGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAGGATAGTCTTAAACGAGTGGAAGATATTGTTCCTCAGTCAATTGGTTGTCAGATTGACGAAATTGTAAATGAACTTGCAAGTACCGTATTTGCACTTGATCCTATAGAAAAGCAAGTTGGCGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGACTGTAATGAACTCGAATGTTTTCATCTAACTGCTACTAGAATTGGAATCACCTCTTCAAGAGCAGCTCTTACAGAAAGAAGATGTCTAAAGAAACTCATTGATAGGGCTCGGGCTGAGGAAGACAAGCGAAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTACACCTTGTTCTCCCACTGATGGCATTCCTGGTGGTCATTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCACCCGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAATGATCCTGTTATAATTGCTTCTGGGCAAACATACGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAATACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTCCTTAACACCTAATTACTGTGTTAAAGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGTGTTCCTATTCCCGAAGGCCCTCCTGAATCTCTTGATTATCACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTTGGCTCTTGCAAATTGAAGAGTGTCAAAGTTGTTCCCGTAGAAGAGAGTGGTATCTCAGAGCAAACAGAGGAAACCATAACTGAAAGTTTTTCTACAAAAGAGGAAGGTAATGAACAGTATCTTGGTTTTCTTAATTTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTGGAACAGTTGAGGCGTGTGCTGCGGGATGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTGGAAGCATTTATGCAGTTTCTGCAATCAGCTATGCATGAAGGGGATGTGATGGCTCTTGACAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTATCGTTGTTGGAGGAAATGAATTCAAAATCTAGTTCCTATGGTTGTGCAGCTGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGCGTGTGATTGGCACGAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCATGCCGAGACAGAAGTCCTGTGCAAGCTAGATTCCCTCCATGCACTCTATAATCTTTCTACTGTGCCAGACAATATTCCAAACCTCCTTTCATCTGGCATCGTTAATGGCCTACAAACCCTTTTTGTAAGCCAGGGTGATAGCACGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCTGTTTCTCAAGAAGGGAGAGAGGAAATAATGTTGGCTCCTGGACTCATAAGCGCCTTGGCTTCCACACTGGATACTGGTGAGCCCTTAGAGCAAGAGCAAGCTGCCTCTTGTCTCCTAATTTTATGTAACAGGAGTGAGAAATGCTGTGAGTTGGTTCTGCAAGAAGGGGTTATACCTGCATTGGTGTCGATATCGGTGAATGGAACCTCGAGAGGGAGAGAGAAATCTCAGAAGCTTTTGATGCTCTTCCGGGAGCAGCGACAAAGAGAGCATTCAGCTGCTAAGACAGATGAAGGTGAATCTGAAAGTAGTGATTTGTCTATGCTTCCTGAAACGAAACCGCTATGTAAATCAATATCTAGAAGAAAGGCAGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTCCCAGTGTTAA 2268 0.4153 MDVAELEENLFAAGDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELASTVFALDPIEKQVGDDLIALLQQGRKFSDSNDCNELECFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTDGIPGGHFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVEESGISEQTEETITESFSTKEEGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKSSSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQREHSAAKTDEGESESSDLSMLPETKPLCKSISRRKAVGKAFSFLWKSKSYSVSQC 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00100 755 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 722 - -
Cca01g00100 755 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Cca01g00100 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 343 IPR013083 -
Cca01g00100 755 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Cca01g00100 755 CDD RING-Ubox_PUB 274 316 IPR045210 -
Cca01g00100 755 SUPERFAMILY RING/U-box 267 345 - -
Cca01g00100 755 Gene3D - 390 713 IPR011989 -
Cca01g00100 755 SUPERFAMILY ARM repeat 418 695 IPR016024 -
Cca01g00100 755 MobiDBLite consensus disorder prediction 701 720 - -
Cca01g00100 755 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 456 502 IPR000225 GO:0005515
Cca01g00100 755 PANTHER U BOX DOMAIN-CONTAINING 1 722 - -
Cca01g00100 755 Pfam U-box domain 271 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00100 Cca-Chr1 994308 998186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00100 1 752 U-box Gene Family AT1G24330 66.148 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00100 - - gmx:100804344 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00100 01 994308 998186 Cca09g01762 09 42161782 42165674 PCT