Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00093 ATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCTAGAGGCGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCTTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTCGAGGATGTTTTGGCCCACAAACAGGCCATTCCTTTCCGACGCTTCTGTGGTGGTGTGGGAAGGACAGCCCAGGCCAAGAACAGACACTCTAATGGACAAGGACGCTGGCCTGTCAAATCAGCTAAATTCATCCTAGATTTGCTGAAAAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCTCATATCCAGGTTAACCAAGCACAGAAGCAAAGACGCCGTACCTACAGAGCTCATGGGAGAATCAACCCTTACATGTCATCTCCCTGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGCCCGAGACGCAGTTGGCAACAAGCAAGAAGAGGGCGGCTGCTGCTTGA 531 0.4934 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKRAAAA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00093 176 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 1 174 - -
Cca01g00093 176 MobiDBLite consensus disorder prediction 153 167 - -
Cca01g00093 176 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Cca01g00093 176 MobiDBLite consensus disorder prediction 153 176 - -
Cca01g00093 176 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Cca01g00093 176 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Cca01g00093 176 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Cca01g00093 176 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Cca01g00093 176 Gene3D Ribosomal protein L22/L17 1 176 IPR036394 GO:0003735|GO:0005840|GO:0006412
Cca01g00093 176 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Cca01g00093 176 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00093 Cca-Chr1 938691 940885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00093 1 176 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.636 1.53e-117 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00093 K02880 - gmx:100305777 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00093 01 938691 940885 Cca09g01768 09 42246004 42249606 PCT