Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00090 ATGGTTATCATGGCGGAGGAAGAAGAGAACGCAGCATCGACCGTATCCGAATTTCCGAAGGGTCGGGTGAAGAAGATAATGACGCTGGACAAGGACGTTAAGAGAGTGAGCTCTGAAGCGTTGTTCCTGGTGTCGCGCTCCACCGAATTATTCCTCCAGTTTCTGGCGGAAAAATCGGCGCAGGTCGCAATCGAGAAGAAACGCAAGACCGTGAATCTCGAACACATAAGAGTGGCCGTTAAGAGACACCAACCAACCAGGGATTTCCTCCTCGACGATCTTCCGCCGCCTTCTCAGCCCAATAAGCCCGATAAGCACACTACGCCCGCGGCTCGGCCCAAATCCGATAAACCTCTGCCTGGTACTCGCCGCATCGATCAATTCTTCCGAAAGCCAGAACCGGAAAACCCGGCCCAGGCCGAGGCCCAAGCCCAATCACCTATACCCGTAGATGAGTCTTAG 462 0.5411 MVIMAEEEENAASTVSEFPKGRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDDLPPPSQPNKPDKHTTPAARPKSDKPLPGTRRIDQFFRKPEPENPAQAEAQAQSPIPVDES 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00090 153 MobiDBLite consensus disorder prediction 84 153 - -
Cca01g00090 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Cca01g00090 153 MobiDBLite consensus disorder prediction 107 131 - -
Cca01g00090 153 Gene3D Histone, subunit A 2 95 IPR009072 GO:0046982
Cca01g00090 153 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 6 133 - -
Cca01g00090 153 SUPERFAMILY Histone-fold 17 83 IPR009072 GO:0046982
Cca01g00090 153 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 6 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00090 8 131 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.903 2.32e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca01g00090 CBFD_NFYB_HMF 1.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00090 - - ccaj:109814845 285.419