Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00077 ATGGAGTGGAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTATTCTTCTTCAATGCAAAAGCCACTGAAAATCCCAGATTACAACCTAACAATTGTAGCGAAGCAGATCAAGAAATCAATGTTGGGGCGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAGCTAATACATGCTTCCTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCGTCATCAAACGGCGATAGCAAGGCATCTATATTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAATGGAGAGCCAGTTGAAACTTCTCCAGCAGCAGTGCCGTCTCCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTCGGCAAACGATTATACTTTGAGGATGTTTGTGCAGGAAGTGATCCCAAGAAACCATCTTCCTTTGATGTTCCCATTTCATCAGGAAAGAAGTATAAAACCAGTAGTCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGATGTGGCCTTGACCTCTCGGTCGCTAAAGATTACCATCGCAAGCACAGAGTATGTGAAACTCATTCCAAGTCCCCAAAGGTGGTTATAGCTGGTTTGGAACGTCGGTTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGTTGCCGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGATGCAATCCAATTGAATCCATCGGCTTTGTCTTCATCACCCTATGATGGGAGGCAAATAATGAACCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAGACATACACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCCCAAAGCCTGCAAAAGCCTTCAACAAGATTCCAAGTATTGTCTCTATGATTTCTGATGATGCCAGTGGCCTTCTAACATCCAGAGGCATAGCAACAAAGAGTAATGTTCCAGGTATAGAAGATCCCAATACTTCATGTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATATGAGACTAAGTCCCTTTCCCTGGACCACTCCACTCGAACAACTGGCATCACTCAGGCCATAACACACTCAATGAGCCAGCGGTTACCATTTCCTTCATCGGAATATTGGCATGCTGATCAGCAACAACCACCACCTCCTTCCACCATGTGTATTTCATTCTCGGATTGTGATAACAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGAATCAGGTTTTCCCTGCAACCAACTGGAGTAA 1347 0.4521 MEWNAKSLGQWDWEHLFFFNAKATENPRLQPNNCSEADQEINVGALYPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSKASILTLEGSQDDSTGKKELCNGEPVETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDPKKPSSFDVPISSGKKYKTSSQNLQHPSCQVEGCGLDLSVAKDYHRKHRVCETHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQPDAIQLNPSALSSSPYDGRQIMNPFAFSRTATNLAWQDIHSSKLPQTKDFLPKPAKAFNKIPSIVSMISDDASGLLTSRGIATKSNVPGIEDPNTSCDPNATQDVNRALSLLSTNSWGAYETKSLSLDHSTRTTGITQAITHSMSQRLPFPSSEYWHADQQQPPPPSTMCISFSDCDNSNRFQDFQLLSAPYESGFPCNQLE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00077 448 MobiDBLite consensus disorder prediction 143 163 - -
Cca01g00077 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 22 447 - -
Cca01g00077 448 MobiDBLite consensus disorder prediction 235 261 - -
Cca01g00077 448 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Cca01g00077 448 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
Cca01g00077 448 MobiDBLite consensus disorder prediction 90 120 - -
Cca01g00077 448 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Cca01g00077 448 Pfam SBP domain 171 244 IPR004333 GO:0003677
Cca01g00077 448 MobiDBLite consensus disorder prediction 64 83 - -
Cca01g00077 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 447 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00077 Cca-Chr1 803358 807203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00077 1 414 SBP-box Gene Family AT5G43270 38.568 6.99e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca01g00077 SBP 8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00077 - - gmx:100781289 746.888