Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00075 ATGCCTCCTGGTTTGGAGTACGACATCGATGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTGAAACCTGTGGAAGTGCTTTACATTTTACGGAATCACGAAAAGTGCGAGTTCACCCACCAGCCCCCTCATCAGCCGGCTGGTGGTTCCCTGTTTCTGTTTAATAGAAGAGTCTTGCGATTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGCAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAATCCTAAATTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGGAATATGAGCATGTTGTTCTTGTGCATTACAGAGAAACAAGTGAGGGGAAATCCAATTCTGAACCTGTCTCACAATTGTCACCAGGTTCCTCTCCTTTGTTTAGTCAAAGTCATAGCTCGTATTCTGCTTACAATCCAGGGACTACATCCATGTTTGGTGATTCATGTGAACCTAATCAGAATTTCTCTAGTCCTGGGTCTTTAGAAGTTACGTCTGACGCTCAAGCCTTGCGCCAATTGGAAGAACAGCTTAGCTTGAATGATGACAGCTTCGATGAAATTGCGCTTAATTTGACCTCATGTCAAGATCAAAGGGTGGTTTATAAGCAAGATAAATCTGCAGCTTCCTCTGGACCAAATGATGAAGTACAACCATATCATGGATATAATGCAAGACAAGATGACAGTGGCACAAATTATCATGACTTACTTGATGATGCTCTTGATGGAAACGAAAAACCTATATACTGGAAAAAGGTGCTGGAATCGTGTAAGCCCTCATCTATGACTAAATTACCAGATCAACATGCATATGAGGCATTTGAAAACGAAAAGTCATTATTTTCTTCAGGAAGAGGAATGACTGCCAACCTGGAAAACAATCACTGGCTAAACTCCAACAGTAAAAATGTTGAAAATTCTGTTTTCTCATTTTCTCAAGACAATAGTGGAATCAATTTTTCTCCATTTTCTCTGGTAGAAACTCCAGGAACTTATGAAACATATTTTGACCAAATCCAAATTCAAGAACCTTTGGCTGTTGATTCAAGCTTGACTGTTGTACAGAAACCAAAATTTATAATTAAGGCAGTCTCCCCAGAATTCTGTTATTCCACTGAGGCTACAAAGGTGATCATTATTGGGTCATTTCTCTGCCATCACTCGGATTCAACCTGGGCATGTATGTTTGGTGATGTTGAAGTCCCTGCTGAGATAATTCAGGATGGCGTAATTTGTTGTGAAGCTCCCTCCGATCTTCTTGGAAAGGTGAATTTATGTGTTACTTCAGGAAATAGGATACCATGCAGTGAAGGGAGAGAGTTTGAGTTTCGAAATAAGAGTAGTAGTTGCGCTCCCTGTAATTCATTGGAAACAGAAGGCAGTAGAAGTCCAGAAGATCTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTGAAAAGGGTGACAACAGAGAATGTGGAAGTCATCTTTCAACAAAACAGAACGATGATGATGATTCATGGAGCCATATTATAGACACTCTTCTAGTTGGCACTGGAACATCATCTGGCACTGTTGACTGGCTTCTTGAAGAGCTGCTGAAGGATAGGCTGCATCTCTGGCTTTCTAGCCGATCCCATGAAAGAGATGAAGGGACAGGCTGTTCTTTGTCAAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTACGTGGGCCTTGAACCCCATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATAAATGGATGGACGGCCCTTCATTGGGCTGCACGATTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGACCCAACTGGTAAAACTGCTGCTTCTATTGCAGCCAGCCATGGCCATAAGGGATTGGCAGGTTATCTTTCAGAGGTAGACCTAACAAGCCATCTGTCATCCCTCACCCTGGAGGAGAGTGAGATGTCTAAAGGATGTTCCGAGCGTGAAGCCGATTTAACTGTCAAACGTGTCTCTGAGGAAAATATTGTGGCCGGTGAGGATCAGGTTTCACTAAGAGCTTCCTTGGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGAACATTCTTTTAGAAAACGGAAAGATAGAGAAGCTGCTGCTGCTGCCACCGCAGGCTGCATTGATGATGACATTTCAGTGCTTATGTTACAATTTAGTCCTCGGAGCTTGCGTGATTACAATTCAGCGGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCTTGTGTGAGGGGATATCAGGTTCGGAAGCAATACAAGTTAATATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGAGGAGAAAACGAGTTGGTTTACGAATTCTCCAACAAGAAATGGAGACAAATGAAGATGAAAGTGATGATGAAGATTTTCTGAACGTGTTCCGAAAAGAGAAAGTATATGCATCAATTCAAAACGCTTTAAAGCGGGTGCTTTCCATGGTCCATTATACCGGTGCCCGTCAGCAATATAGACGCTTGCTTGACTTGTATCGTCAAGCCAAGACTGAACGTGGCAGCACGAGTGATGAAGCACCATTATCATATTTGGAAGAGGAAGTTTTCAAAATAGAAGACGATGATTTGTATCAATTTTGGGAAGCTTTCAGGCCTTCCTAG 2853 0.4262 MPPGLEYDIDDLFQEAKKRWLKPVEVLYILRNHEKCEFTHQPPHQPAGGSLFLFNRRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLEPEYEHVVLVHYRETSEGKSNSEPVSQLSPGSSPLFSQSHSSYSAYNPGTTSMFGDSCEPNQNFSSPGSLEVTSDAQALRQLEEQLSLNDDSFDEIALNLTSCQDQRVVYKQDKSAASSGPNDEVQPYHGYNARQDDSGTNYHDLLDDALDGNEKPIYWKKVLESCKPSSMTKLPDQHAYEAFENEKSLFSSGRGMTANLENNHWLNSNSKNVENSVFSFSQDNSGINFSPFSLVETPGTYETYFDQIQIQEPLAVDSSLTVVQKPKFIIKAVSPEFCYSTEATKVIIIGSFLCHHSDSTWACMFGDVEVPAEIIQDGVICCEAPSDLLGKVNLCVTSGNRIPCSEGREFEFRNKSSSCAPCNSLETEGSRSPEDLLLLVRFAEMLLSASTEKGDNRECGSHLSTKQNDDDDSWSHIIDTLLVGTGTSSGTVDWLLEELLKDRLHLWLSSRSHERDEGTGCSLSKKEQGIIHMVSGLGFTWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIAASHGHKGLAGYLSEVDLTSHLSSLTLEESEMSKGCSEREADLTVKRVSEENIVAGEDQVSLRASLDAVRNAAQAAARIQAAFREHSFRKRKDREAAAAATAGCIDDDISVLMLQFSPRSLRDYNSAALSIQKKYRGWKGRKEFLALRQKVVKIQACVRGYQVRKQYKLILWAVGILDKVVLRWRRKRVGLRILQQEMETNEDESDDEDFLNVFRKEKVYASIQNALKRVLSMVHYTGARQQYRRLLDLYRQAKTERGSTSDEAPLSYLEEEVFKIEDDDLYQFWEAFRPS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00075 950 Pfam Ankyrin repeats (3 copies) 596 673 IPR002110 GO:0005515
Cca01g00075 950 CDD IPT 384 467 - -
Cca01g00075 950 MobiDBLite consensus disorder prediction 226 254 - -
Cca01g00075 950 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Cca01g00075 950 PANTHER CALMODULIN-BINDING PROTEIN 1 947 - -
Cca01g00075 950 Pfam IPT/TIG domain 383 460 IPR002909 -
Cca01g00075 950 Pfam IQ calmodulin-binding motif 808 827 IPR000048 GO:0005515
Cca01g00075 950 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Cca01g00075 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 733 834 IPR027417 -
Cca01g00075 950 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Cca01g00075 950 ProSiteProfiles IQ motif profile. 731 760 IPR000048 GO:0005515
Cca01g00075 950 Gene3D - 783 830 - -
Cca01g00075 950 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 947 - -
Cca01g00075 950 SMART ANK_2a 613 642 IPR002110 GO:0005515
Cca01g00075 950 SMART ANK_2a 652 681 IPR002110 GO:0005515
Cca01g00075 950 ProSiteProfiles Ankyrin repeat region circular profile. 613 639 - -
Cca01g00075 950 SUPERFAMILY E set domains 384 467 IPR014756 -
Cca01g00075 950 SMART CG_1_2 12 130 IPR005559 GO:0003677
Cca01g00075 950 Gene3D - 565 682 IPR036770 -
Cca01g00075 950 MobiDBLite consensus disorder prediction 132 154 - -
Cca01g00075 950 Gene3D Immunoglobulins 378 473 IPR013783 -
Cca01g00075 950 SMART iq_5 730 752 IPR000048 GO:0005515
Cca01g00075 950 SMART iq_5 782 804 IPR000048 GO:0005515
Cca01g00075 950 SMART iq_5 805 827 IPR000048 GO:0005515
Cca01g00075 950 ProSiteProfiles IQ motif profile. 806 830 IPR000048 GO:0005515
Cca01g00075 950 SUPERFAMILY Ankyrin repeat 584 674 IPR036770 -
Cca01g00075 950 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515
Cca01g00075 950 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Cca01g00075 950 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00075 Cca-Chr1 763929 773192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00075 5 937 CAMTA Transcription Factor Family AT1G67310 49.950 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca01g00075 CG-1 7.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00075 K21596 - gmx:100791430 1480.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00075 01 763929 773192 Cca09g01788 09 42497006 42506012 PCT