Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00072 ATGATGATGAAATCCTTATGGAAAAGCCTTCAACAGAAGTGTATGAAGCAAAAGAGTGAAGTTGACGATAGTAGTGTGTCAGTGCATGGTGATGACTTGGTTGTTTTGCCGCCAAATTGCAATTGTTGCATAGAGGAAAACAAAGAATGTAACTGTGACCACGTTAATGCCGCAGAAGAGCGTGATGATAACGCCAACAGTTCTTTTACTCATGCTGTCATCAACATGGTGGGGATGCTCATAGGTCTAGGGCAACTATCAACTCCATATGCAGTACAAAATGGAGGGTGGTCCTCTACATCCTTGCTTGTGGGACTAGGGGTGATGTGTTCTTATAGTTCTCACATACTTGGAAAATGCCTCAAAAAGAATCCCAAGTTAAGAAGTTTTGTGGACATTGGTAAGCATGCATTTGGAGCGAAAGGAAGATTAGTGGCTTCAACAATCATCTACATGGAGATCTTCATGGCCCTTGTTTCCTACACCATCTCATTACATGATAATTTGATCACAGTGTTTTTGGGGACAAATTTGAAGCTGCACTTGCCTAATTTTTCTTCATCTCAGCTCCTAACAGTGGTGGCAGTCTTTATTTCCATGCCTAGTTTGTGGATCAGAGACCTTTCCTCCATATCTTTCCTTTCAAGTGTAGGTATTCTCATGTCTCTACTCATTTTCTTGTGTGTTGTAGCCACTGCACTTTTAGGTGTTCATCCCAATCATACCATACCTGTCCTCCACCTCCGTAACATTCCATCAGTATCTGGCCTTTACATCTTCGGATATGGAGGACATATTGTGTTCCCTGATTTATACAAGGCCATGAAAGACCCCTCCAAATTTACAAAGGTCTCTATTGTGAGCTTCGCAGTAGTTACAGCAGTGTATACAACATTGGGGTTCATGGGTGCAAAAATGTTTGGTAATGATGTAAAGTCTCAGATCACACTCAGCATGCCACCAGAGCGCATTGTGACAAAGATTGCTCTGTGGGCAACCGTGGTGACACCAATGACCAAATATGCACTTGAATTCACACCATTTGCAATTCAGCTAGAGCATGCACTTCCAAGTTCCATGAGTGGCAGGACCAAAATGATAGTTAGGGGCTGTGTTGGTTCATTTTCACTTTTGATCATCCTAACCCTTGCTCTGTCATTTCCATATTTTGAGCATGTACTTAGCCTCACTGGTTCCCTTGTTAGTGCGTCTGTTTGTTTGGTTTTGCCATGTGCTTTCTACATTAAGATATGTTGGGGTCAGATTTCAAAGCCTATCTTACTCATAAACCTCTCTCTCATCATATTTGGCTTTATTCTTGCCGTCATGGGTACCATTTCCTCATCACAGTTACTTCTGAAGAATTTTCAGTTACATCACTCAACTTGA 1389 0.4176 MMMKSLWKSLQQKCMKQKSEVDDSSVSVHGDDLVVLPPNCNCCIEENKECNCDHVNAAEERDDNANSSFTHAVINMVGMLIGLGQLSTPYAVQNGGWSSTSLLVGLGVMCSYSSHILGKCLKKNPKLRSFVDIGKHAFGAKGRLVASTIIYMEIFMALVSYTISLHDNLITVFLGTNLKLHLPNFSSSQLLTVVAVFISMPSLWIRDLSSISFLSSVGILMSLLIFLCVVATALLGVHPNHTIPVLHLRNIPSVSGLYIFGYGGHIVFPDLYKAMKDPSKFTKVSIVSFAVVTAVYTTLGFMGAKMFGNDVKSQITLSMPPERIVTKIALWATVVTPMTKYALEFTPFAIQLEHALPSSMSGRTKMIVRGCVGSFSLLIILTLALSFPYFEHVLSLTGSLVSASVCLVLPCAFYIKICWGQISKPILLINLSLIIFGFILAVMGTISSSQLLLKNFQLHHST 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00072 462 Pfam Transmembrane amino acid transporter protein 66 447 IPR013057 -
Cca01g00072 462 PANTHER OS05G0424000 PROTEIN-RELATED 50 458 - -
Cca01g00072 462 PANTHER AMINO ACID TRANSPORTER AVT1H 50 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00072 Cca-Chr1 735579 738352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00072 40 460 Amino Acid or Auxin Permease AAAP Family AT5G16740 59.859 5.78e-171 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00072 - - gmx:100790897 735.332