Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00061 ATGCTCTCTCTCCATTTGACCACTTTCCTCAACCGGGAGGGAAGGATAGAAAATCCATTGCATATCCTCAAATTTCGTAGCATCTTCTTTTTCTCACCAGAACCCACAAGTTATAGTGCTTTGAGATATTGTTATTATGGGACAGAAAGGGTTGGAAACCCGAAATTGGTACCAAACGAGAAGCCAAACAGGGTGGGGCTTTTTTGGGACTTGGACAATAAACCACCCAACGCAATCCCACCTTATGAAGTTGCCAACAAGCTGAGAATAGCTTCATCTTCCTTTGGGGTTGTTCGTTACATGGTGGCTTATGCAAATAGTCACACTTTTAGCCATGTTCCTCATTGTGTCCGTGAGCAAAGGAAAGAGAGGGAACTGTTGTATCGTCTAGAGAACAAGGGTGTCATCAAGCCGAATCAACCCTATCGTTGTAAGGTTTGTGGGAGAAAGTTTCATACCAATGAAAAGCTTGTTAACCATTTCAAGCAGCTGCATGAGCGTGAACACGTGAAAAGGATGAACCAGATAGAGTCTGCTAGGGGGAGCAGGAAGGTGAAGTTGGTGGGTAAGTACTCCATGAAAATGGAAAAGTATAGGAAGGCTGCAAGTGATGTTCTCACTCCCAAAGTGGGGTATGGTTTGGGAGATGAGTTAAAGAGGGCTGGTTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATAGAGCATTGCGAAGCCACATGGTGGATATCATGGATCATAGGAGGGTTGAGTGTGTGGTCCTTGTGTCCGATGATACTGATTTTGTTGACGTGATAAAGGAAGCAAAGCTACGGTGTCTCAAGACCGTTGTCATTGGGGATGTTGATGATGGTGTGTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAAGTTTTGATGGGGAAGGCGAAAAAGCAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATCTTAAAGAGGTTAGAGTGGACATATAACCCAGATGTGGATGAAAAGAAATTCAATCTGGATGATACCCTTACTGAAGATGATAATATTGAAGATACCTGTGGTGAAGTTGATGATGATTATAAGGATGACAGATGTTCTTGGTGGGAATTAGATTCTGAAGATGATGTCTCAAATAGACAGCCAGGCAAATCATCTGGTTTATCTGTGAATAGATGA 1185 0.4321 MLSLHLTTFLNREGRIENPLHILKFRSIFFFSPEPTSYSALRYCYYGTERVGNPKLVPNEKPNRVGLFWDLDNKPPNAIPPYEVANKLRIASSSFGVVRYMVAYANSHTFSHVPHCVREQRKERELLYRLENKGVIKPNQPYRCKVCGRKFHTNEKLVNHFKQLHEREHVKRMNQIESARGSRKVKLVGKYSMKMEKYRKAASDVLTPKVGYGLGDELKRAGFWVQTVLDKPQAADRALRSHMVDIMDHRRVECVVLVSDDTDFVDVIKEAKLRCLKTVVIGDVDDGVLKRTADTAFSWEEVLMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDVDEKKFNLDDTLTEDDNIEDTCGEVDDDYKDDRCSWWELDSEDDVSNRQPGKSSGLSVNR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00061 394 CDD PIN_LabA-like 153 283 - -
Cca01g00061 394 SMART c2h2final6 142 165 IPR013087 -
Cca01g00061 394 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 57 381 - -
Cca01g00061 394 Pfam NYN domain 216 294 IPR021139 GO:0004540
Cca01g00061 394 PANTHER - 57 381 - -
Cca01g00061 394 Gene3D Classic Zinc Finger 119 203 - -
Cca01g00061 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Cca01g00061 394 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Cca01g00061 394 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00061 Cca-Chr1 644782 646142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00061 59 381 C2H2 Transcription Factor Family AT4G12240 60.366 2.78e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g00061 NYN 3.9e-06 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00061 - - gmx:100785257 643.269