Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00053 ATGGCTGCCCCCAAATTAAAACTCCAAACCCTACTCTGTAAGCTCTTTCTGCTTCTCTCCGTCGCCTGCACCGCCACCGCCGATGACGCCGCCTTCATGGCCAAGCTGGCGAAGGCGCTGAGCCCCACGCCCTCGGGCTGGTCGGGGAGCAGCTTCTGCGACTGGAAGGGCGTCAAGTGCAGCGCCAACCGCGTCACCTCGATCAGCCTCGGCTCGCAGAAACTCACCGGAACGCTCCCTCCGGATCTCAACTCGCTCTCCCAACTCACCACCCTCTCTCTCCAGCACAACGCGCTCGGCGGCGCGTTGCCCTCACTCGCCAACCTCTCCATGCTTGAAACCGTGTTCCTGGACGCCAACAACTTCACCTCCGTCCCCGACGGCTGCTTCCAGGGCCTCACCAGCTTGCAAACCCTAAGTATGACCGACAGCGTCAACCTCGCGCCCTGGACGCTTCCTGCCGAGTTGACTCAGTCCACCAACCTCGCCAACCTCGACCTCGGTAACACGAACCTCGTTGGCTCCTTACCTGATGTGTTCGACTCGTTCGTGAGTTTGCAGGAACTTCGTCTCTCTTACAACAATCTCACTGGGGTCTTACCCAAGTCCTTCGCGGGATCTGGGATTACGAATCTATGGCTCAACAATCAGAAGGACGGTTCTGGGTTTTCAGGTCCCATTGACGTGCTTTCTGGGATGACTCACTTGTCTCAGGTTTGGCTTCACAAGAACCAGTTCACGGGTCCCATTCCGGATTTGTCAAATTGTACTAGTTTGTTCGATCTGCAGCTTCGGGACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTCATGTCACTTAGAAGCCTTCAGAATGTTTCTCTGGATAACAACAAGCTTCAGGGTCCTGTTCCTTCCTTTGGGAAAGGTGTGCAGTTCACTCTCGACGGGATCAATAGCTTTTGTAGGAAAGATGCTGGACCCTGTGATTCTCGTGTCACCACCATGCTTGATATTGCGAAGGATTTCGGGTATCCCCTTAAGTTGGCGAATTCCTGGTCGGGGAATGATCCTTGTAATGATTGGAGTTTCGTTGTGTGTGCGGAGGGGAAGATTATTACGGTGAATTTGGCTAAGCAGAATTTGACGGGAACGATTTCACCTGCGTTTGCTAATTTGACTGATTTGAGGAACTTGTATCTTAGTGGTAATAATTTGGAAGGTTCAATCCCGGGGAGCTTGACGAGTTTAGCCCAGCTTGAGGTTCTGGATGTGTCTAATAATAATCTATCCGGTGATGTTCCCAAGTTCTCAAGCAAGGTGAGGTTCAATGCTGCAGGTAATGATTTACTTGGGCGTTCTGGTGGTGGTGGCGGTGGAACTACACCGTCGAAGGGTTCTGGTGATGCACCGAGTGGAAGTCCAAACGCGGGGTCGAGTGGTTCTTCACTTTCATCTGCTTGGATTGCAGGTATTATTATTATTGCTGTGTTTTTTGTTGCGGTGGTTGTGTTTGTCTTTTGCAAGTGTCATGCTAAAAACCGGCATGGGAAGTTTGGGAGGGTTAATAATCGGGAAAATGGGAAAGGAGAGGTTAAGATTGATATGATGAGTGCGAATTCCAATGGATACGGTGGTGTTCCGAGCGAGTTGCAAAGTCAGGGAAGTGAGCGTAGTGATCTTCATGTTTTTGAGAGTGGGAATGCTACTATTTCGATCCAAGTTCTTCGGCAAGTAACTGAAAATTTCAGTGAAAAGAACATTTTGGGCAGGGGAGGATTTGGGGTAGTTTATAAAGGGGAATTGCATGATGGAACTCAGATCGCTGTGAAGAGGATGGAATCTGTTGCTACGGGGAGTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTCACTAAAGTAAGGCACAGGCATTTGGTGGCTCTTTTAGGATATTGCATTAACGGCAATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACACTAACGCAACACCTGTTCGATTGGCGTGATCATGGCTGTGCTCCCTTGACCTGGAAACAGAGGGTAGCGATAGCTTTGGATGTAGCTCGGGGTGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATATTATTGGGTGATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTAGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGCTACTGGAAGAGTGACGACCAAAGTAGATGTATACGCATTTGGAGTAGTTTTAATGGAACTGATTACTGGTAGAAGGGCATTGGACGATACTGTGCCTGATGAAAGGTCTCACTTAGTTTCCTGGTTCCGTAGGGTACTAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAAACACTTGATCCCGATGAGGAAACCATGGAAAGCATATATAAAGTGGCTGAGCTAGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCTGATATGGGGCATGCAGTGAATGTCTTGGTTCCTCTGGTAGAGCAATGGAAGCCTACCAGCCATGAAGAAGAAGAAGGTTATGGCATTGACCTTCACATGAGCCTTCCTCAAGCTCTGCGAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTGACATGTCCATCTCACAAACTCAATCAAGCATTCCCGCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTGA 2772 0.4899 MAAPKLKLQTLLCKLFLLLSVACTATADDAAFMAKLAKALSPTPSGWSGSSFCDWKGVKCSANRVTSISLGSQKLTGTLPPDLNSLSQLTTLSLQHNALGGALPSLANLSMLETVFLDANNFTSVPDGCFQGLTSLQTLSMTDSVNLAPWTLPAELTQSTNLANLDLGNTNLVGSLPDVFDSFVSLQELRLSYNNLTGVLPKSFAGSGITNLWLNNQKDGSGFSGPIDVLSGMTHLSQVWLHKNQFTGPIPDLSNCTSLFDLQLRDNQLTGVVPPSLMSLRSLQNVSLDNNKLQGPVPSFGKGVQFTLDGINSFCRKDAGPCDSRVTTMLDIAKDFGYPLKLANSWSGNDPCNDWSFVVCAEGKIITVNLAKQNLTGTISPAFANLTDLRNLYLSGNNLEGSIPGSLTSLAQLEVLDVSNNNLSGDVPKFSSKVRFNAAGNDLLGRSGGGGGGTTPSKGSGDAPSGSPNAGSSGSSLSSAWIAGIIIIAVFFVAVVVFVFCKCHAKNRHGKFGRVNNRENGKGEVKIDMMSANSNGYGGVPSELQSQGSERSDLHVFESGNATISIQVLRQVTENFSEKNILGRGGFGVVYKGELHDGTQIAVKRMESVATGSKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRDHGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEEGYGIDLHMSLPQALRRWQANEGTSTMFDMSISQTQSSIPAKPSGFADSFDSMDCR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00053 923 MobiDBLite consensus disorder prediction 441 471 - -
Cca01g00053 923 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 11 923 - -
Cca01g00053 923 SUPERFAMILY Protein kinase-like (PK-like) 553 852 IPR011009 -
Cca01g00053 923 Gene3D Ribonuclease Inhibitor 27 320 IPR032675 -
Cca01g00053 923 Gene3D Phosphorylase Kinase; domain 1 539 653 - -
Cca01g00053 923 Gene3D Ribonuclease Inhibitor 324 447 IPR032675 -
Cca01g00053 923 Pfam Leucine rich repeat 368 423 IPR001611 GO:0005515
Cca01g00053 923 Pfam Leucine Rich Repeat 185 205 IPR001611 GO:0005515
Cca01g00053 923 Gene3D Transferase(Phosphotransferase) domain 1 654 875 - -
Cca01g00053 923 CDD STKc_IRAK 582 855 - -
Cca01g00053 923 SMART serkin_6 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00053 923 PANTHER OSJNBA0070M12.3 PROTEIN 11 923 - -
Cca01g00053 923 SMART LRR_typ_2 280 303 IPR003591 -
Cca01g00053 923 SMART LRR_typ_2 109 132 IPR003591 -
Cca01g00053 923 SMART LRR_typ_2 183 206 IPR003591 -
Cca01g00053 923 SMART LRR_typ_2 86 108 IPR003591 -
Cca01g00053 923 SMART LRR_typ_2 410 432 IPR003591 -
Cca01g00053 923 SMART LRR_typ_2 386 409 IPR003591 -
Cca01g00053 923 MobiDBLite consensus disorder prediction 901 923 - -
Cca01g00053 923 SUPERFAMILY L domain-like 35 430 - -
Cca01g00053 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Cca01g00053 923 Pfam Leucine rich repeat N-terminal domain 327 360 IPR013210 -
Cca01g00053 923 Pfam Leucine rich repeat N-terminal domain 28 61 IPR013210 -
Cca01g00053 923 ProSiteProfiles Protein kinase domain profile. 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00053 923 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Cca01g00053 923 Pfam Protein tyrosine and serine/threonine kinase 579 850 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00053 Cca-Chr1 560566 565186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00053 65 852 Receptor kinase-like Gene Family AT5G07280 33.782 4.27e-101 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca01g00053 PK_Tyr_Ser-Thr 8.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00053 - - gmx:100781851 1536.16