Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00052 ATGTATGAAAACCTTTCAAAGTATGATACCGTAGAAATTGGGTCGGTCGTAAATCAATACTTGTTCATGGCTGATCCGAATTGTTGTGTCTCAAACTCAAACTATAAAGTGTTGCTATGTTTGAGTCTGTTGTGCACCGTCATTGCCGAGGATGGAGCGTATATGTCAAAACTAGCCGAAGCCTTGAGTCCAACGCCGTCAGGGTGGTCGGGAAGCAACTTCTGCGAATGGAAGGGCGTCATGTGCAGCACCAACGGCGTCACCGAAATCAACCTCGCTTCAATGTCCCTTAGTGGAACACTCCCTCCAGACCTCAACTCGCTCTCCCAACTCACTACCCTCGCTCTCGAAAACAACGCGCTCTCCGGCGCGTTGCCTTCACTCGCCAACCTTTCCATGCTCCAAACTGTGATCCTCGACGCCAACAACTTCACCTCCATCCCCCATGGTTGCTTCAAGGGTCTCACCAGCTTGCAGTCCCTCAGCATGACCAGTAACATCCACCTCGCTCCCTGGACGATTCCCGCCGAGTTGACTCAGTCCACCATCCTCGCTAACCTCGACCTCGCTAACACGAACCTCGTTGGCTCCTTACCTGATGTGTTCGACTCGTTCGTGAGTTTGCAGGAACTTAGTCTCTCTTACAACAACCTCACTGGGGTCTTACCCAAGTCCTTCGCGGGATCTGGGATTACGAATCTATGGCTCAACAATCAGAAGGACGGTTCTGGGTTTTCAGGTCCCATTGACGTGCTTTCTAGGATGACTCACTTGTCTCAGGTTTGGCTTCACAAGAACCAGTTCACTGGTCCCATTCCGGATTTGTCGAATTGTACTAGTTTGTTTGATCTGCAGCTTCGGAACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTCATGTCACTTAGAAGCCTTCAGAATGTTTCTCTGGATAACAACAAGCTTCAGGGTCTTGTTCCTTCCTTTGGGAAAGGTGTGCAGTTCACTCTCGACGGGATCAATAGCTTTTGTCGGAAAGATGCTGGACCCTGTGATTCTCGTGTCACCACCATGCTTGATATTGCGAAGGATTTCGGGTATCCCCTTAAGTTGGCGAATTCCTGGTCGGGGAATGATCCCTGTAATGATTGGAGTTTCGTTGTGTGTGCGGAGGGGAAGATTATTACGGTGAATTTGGCTAAGCAGAATTTGACGGGAACGATTTCACCTACGTTTGCTAATTTGACTGATTTGAGGAACTTGTATCTTAGTGATAATAATTTGGAAGGTTCAATCCCGGGGAGCTTGACGAGTTTAGCTCAGCTTGAGGTTCTGGATGTGTCTAATAATAATCTATCCGGTGATGTTCCCAAGTTCTCAAGCAAGGTGAGGTTCAATGCTGCAGGTAATGATTTACTTGGGCGTTCTGGTGGTGGTGGCGGTGGAACTACACCGTCGAAGGGTTCTGGTGATGCACCGAGTGGAAGTCCAAACGCGGGGTCGAGTGGTTCTTCACTTTCATCTGCTTGGATTGCAGGTATAGTCATTATTGCTGTGTTCTTTGTTGTAGTCGTGGTATTTGTCTTTATAAAACGGCATGGGAAATTCGGAAGGGTTAATAATCTAGAAAGCAGAAAAGGACGTGTTCCAAGTTTTGAAGGTGAAAGTGTTACCATGTCAATCCAAGTTCTTCGGCAAGTAACGAATAATTTCAGTGAAGATAACATTTTGGGTCGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGAATGACGGAACTAAAATTGCTGTGAAAAGGATGCAATCTAGTGCAATAGGAAGTATGGGAATGCATGAGTTCCAAGCAGAGATTGCATTTCTCAGTAAAGTAAGGCACAGGCATTTGGTGGCTCTTTTAGGATATTGCATTGACGGCAACGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACATCTCTTCTATTGGCGTGAAAATGGTTGTACACCTTTGACTTGGAAACAAAGGGTGACAATAGCTTTGGATGTAGCACGAGGAGTCGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCAAACATATTATTGGGTGATGACATAAGAGCAAAGGTTGCAGATTTTGGTTTGGTTAAAAATGCCCCAGATGATGGCAAGGATTCTGTCTGGACTCGAGTGGCAGGAACATTTGGATATATGGCACCTGAATATGCGGCTACGGGAAGAGTGACGACCAAAGTAGACGTGTACGCATTTGGAATAGTTTTGATGGAACTTATTAGCGGTAGAAAGGCATTGGACAATACTGTGCATGAAGAAATGTGTCACTTGGGTTCATGGTTCCGTAGGATACTACTTAACGTGGAAAACATCTCAATGGCTACTGATCAAACTCTGAACCTTGATGAGGAAACCATGGAGAGCATATGTAAAGTGGCTGAGCTTGCAGGCCATTGCACTGCTCCTGAACCACATCAAAGGCCGGATATGGGGCATGCAGTCAATGTCTTGGTTCCTCTTGTACAGCAGTGGAACCCTGCTGCCTCCACCCATGAAGAAGAAGGTTGTGACATGATCTATGAAGGCACTTATTATGACATGTCCTTCTCAGAAATTCTATCAGGCCGCTGA 2643 0.4635 MYENLSKYDTVEIGSVVNQYLFMADPNCCVSNSNYKVLLCLSLLCTVIAEDGAYMSKLAEALSPTPSGWSGSNFCEWKGVMCSTNGVTEINLASMSLSGTLPPDLNSLSQLTTLALENNALSGALPSLANLSMLQTVILDANNFTSIPHGCFKGLTSLQSLSMTSNIHLAPWTIPAELTQSTILANLDLANTNLVGSLPDVFDSFVSLQELSLSYNNLTGVLPKSFAGSGITNLWLNNQKDGSGFSGPIDVLSRMTHLSQVWLHKNQFTGPIPDLSNCTSLFDLQLRNNQLTGVVPPSLMSLRSLQNVSLDNNKLQGLVPSFGKGVQFTLDGINSFCRKDAGPCDSRVTTMLDIAKDFGYPLKLANSWSGNDPCNDWSFVVCAEGKIITVNLAKQNLTGTISPTFANLTDLRNLYLSDNNLEGSIPGSLTSLAQLEVLDVSNNNLSGDVPKFSSKVRFNAAGNDLLGRSGGGGGGTTPSKGSGDAPSGSPNAGSSGSSLSSAWIAGIVIIAVFFVVVVVFVFIKRHGKFGRVNNLESRKGRVPSFEGESVTMSIQVLRQVTNNFSEDNILGRGGFGVVYKGELNDGTKIAVKRMQSSAIGSMGMHEFQAEIAFLSKVRHRHLVALLGYCIDGNERLLVYEYMPQGTLTQHLFYWRENGCTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDIRAKVADFGLVKNAPDDGKDSVWTRVAGTFGYMAPEYAATGRVTTKVDVYAFGIVLMELISGRKALDNTVHEEMCHLGSWFRRILLNVENISMATDQTLNLDEETMESICKVAELAGHCTAPEPHQRPDMGHAVNVLVPLVQQWNPAASTHEEEGCDMIYEGTYYDMSFSEILSGR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00052 880 ProSitePatterns Protein kinases ATP-binding region signature. 570 592 IPR017441 GO:0005524
Cca01g00052 880 Pfam Leucine rich repeat 390 445 IPR001611 GO:0005515
Cca01g00052 880 Gene3D Ribonuclease Inhibitor 346 469 IPR032675 -
Cca01g00052 880 CDD STKc_IRAK 570 844 - -
Cca01g00052 880 Gene3D Transferase(Phosphotransferase) domain 1 642 867 - -
Cca01g00052 880 SMART serkin_6 564 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00052 880 PRINTS Leucine-rich repeat signature 208 221 - -
Cca01g00052 880 PRINTS Leucine-rich repeat signature 432 445 - -
Cca01g00052 880 ProSiteProfiles Protein kinase domain profile. 564 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00052 880 Gene3D Phosphorylase Kinase; domain 1 528 641 - -
Cca01g00052 880 SUPERFAMILY Protein kinase-like (PK-like) 553 855 IPR011009 -
Cca01g00052 880 Pfam Leucine Rich Repeat 207 227 IPR001611 GO:0005515
Cca01g00052 880 SUPERFAMILY L domain-like 58 450 - -
Cca01g00052 880 PANTHER RECEPTOR-LIKE KINASE TMK4 36 861 - -
Cca01g00052 880 MobiDBLite consensus disorder prediction 463 492 - -
Cca01g00052 880 Pfam Leucine rich repeat N-terminal domain 349 382 IPR013210 -
Cca01g00052 880 Pfam Leucine rich repeat N-terminal domain 63 83 IPR013210 -
Cca01g00052 880 Gene3D Ribonuclease Inhibitor 53 342 IPR032675 -
Cca01g00052 880 Pfam Protein kinase domain 565 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00052 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Cca01g00052 880 PANTHER OSJNBA0070M12.3 PROTEIN 36 861 - -
Cca01g00052 880 SMART LRR_typ_2 205 228 IPR003591 -
Cca01g00052 880 SMART LRR_typ_2 108 130 IPR003591 -
Cca01g00052 880 SMART LRR_typ_2 408 431 IPR003591 -
Cca01g00052 880 SMART LRR_typ_2 131 154 IPR003591 -
Cca01g00052 880 SMART LRR_typ_2 302 325 IPR003591 -
Cca01g00052 880 SMART LRR_typ_2 432 454 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00052 Cca-Chr1 542666 545793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00052 90 841 Receptor kinase-like Gene Family AT5G07280 33.416 5.20e-93 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca01g00052 Pkinase 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00052 - - ccaj:109809286 1676.37