Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00044 ATGCAGAGAGAAATGGAGGGATCAGGTTCAGGTTCAGGTTcaggtgtaggtccggcaccgttcctactgaaaacgtacgagatggtggatgattcatcgacggcggagatagtttcatggagctctgccaacaacagcttcatcgtttggaaccccgcggatttctctcgccttcttcttcccaccttcttcaagcacaacaacttcaccagcttcatccgtcagcttaatacctatGGATTTCGAAAAGTGCACCCTGAGCGATGGGAGTTTGCCAATGAGGATTTTGTGAGGGATCAGAAGCATCTTCTTAAGAATATTCACCGCAGGAAACCCATCCACAGTCACACTCACCCTGTTGCCGATCCAGAAAGGTTGGCATTCGAGGAAGAAATTGAAAAGCTTTCGCACGACAAAACCACCATTCAGTCTAGTATTTTTCGCTTCGAACAGCACCACTCTGCTGCTAAGACTCATCTTGAAGATCTACAGCACCGCTTGGATGGCATGGAGGAGAGGCAGACCACTTTGCTCAACTACTTTGAGAAGGCTCTTCGCAACCCCACAATTGTTCAGCAAATTTCTCGCAGAATTGAGTCCTTGGATTTGTTGGCTTATAACAAGAAAAGGAGATTACCTCAGGTTGATGACCATGACCATCCCTTGCACCATCCTGTGCCTGAAAACAGCTTTGTTGATAATTTTGGAATGGAATTTGGGAATATTTCTCATCAAGATTTCTCCAATAAGCTCACACTGGAATTGTCCCCAGCTGTCTCGGATATGAACTTGGTAGTGTCATGTAGTACACAGAGTTCAAATGAAGATGGAGAAAGCCCACATGAGATTCTACCTGCACAAACTGGAGCATCTTTTACTTTTCAGATGGATTCTTCTGAGAGCCCCAAATTGGACTCAAATGGTGAAGATGGTGACAGTTATATATCCTGTCTTTTAAATCTAACTCTGGCATCTTCACCTCTCCAAGTCAAGAGAAATTCATGCACAGATCGATCACCACCCCAGATAGACTGTCCAGAATTTGGGAAATTGGCTGAATCAAAATCTTGTGCCGATGATAATAAAGAATATGATGTTGGAGAGTCTTCAAGCAGAAATGTAAACGAGGTTGCTAATTTAGCTGATGCTGAGGCTCCCCCAGATGCTCCAGTTAGAGTAAATGATGTGTTTTGGGAACAGTTTCTTACAGAAAGACCAGGCTGTTCAGACAATGATGACTCAACGTCCACCCACAAAGCAAATGCATATGCTGAGCAAGATGAAGGGCGCTCAGTTCATGAAATCTCTGGAAATGCTATCAATATGGATCAGTTGACACTCTGA 1344 0.3705 MQREMEGSGSGSGSGVGPAPFLLKTYEMVDDSSTAEIVSWSSANNSFIVWNPADFSRLLLPTFFKHNNFTSFIRQLNTYGFRKVHPERWEFANEDFVRDQKHLLKNIHRRKPIHSHTHPVADPERLAFEEEIEKLSHDKTTIQSSIFRFEQHHSAAKTHLEDLQHRLDGMEERQTTLLNYFEKALRNPTIVQQISRRIESLDLLAYNKKRRLPQVDDHDHPLHHPVPENSFVDNFGMEFGNISHQDFSNKLTLELSPAVSDMNLVVSCSTQSSNEDGESPHEILPAQTGASFTFQMDSSESPKLDSNGEDGDSYISCLLNLTLASSPLQVKRNSCTDRSPPQIDCPEFGKLAESKSCADDNKEYDVGESSSRNVNEVANLADAEAPPDAPVRVNDVFWEQFLTERPGCSDNDDSTSTHKANAYAEQDEGRSVHEISGNAINMDQLTL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00044 447 MobiDBLite consensus disorder prediction 423 447 - -
Cca01g00044 447 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00044 447 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00044 447 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00044 447 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00044 447 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 441 IPR027725 -
Cca01g00044 447 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Cca01g00044 447 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00044 447 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 14 441 - -
Cca01g00044 447 Gene3D - 16 111 IPR036388 -
Cca01g00044 447 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00044 447 Coils Coil 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00044 Cca-Chr1 466444 468305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00044 21 447 HSF AT4G13980 49.134 1.69e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca01g00044 HSF_DNA-bind 3.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00044 K09419 - gmx:100816484 544.273