Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00037 | ATGGCACTGTTTAACAAGTTGGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCAGACAAGCACCTGTTGCATCCATGCTTAATTCTATTCGCTGCATGTCTTCAAGCAAGCTTTTCGTTGGAGGCCTTTCATATGGGGTTGATGATCAGTCTCTTAAGGATGCGTTTGCTAGCTTTGGAGATGTTGTTGAGGCAAGAGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGGTTTGTTAACTTCTCCAGTGACGAATCTGCAAGTTCGGCACTCTCTGCAATGGATGGGCAGGATCTAAATGGGAGAAACATTCGGGTATCCTTTGCAAATGATAGGCCTTCTGGACCTCGATCTAgtggtggtggtggttatggcgggggtggctatggtggcgggggtggctatggtggtgcttctcgtaatggtggttggtgA | 444 | 0.3761 | MALFNKLGNVLRQGAARSRQAPVASMLNSIRCMSSSKLFVGGLSYGVDDQSLKDAFASFGDVVEARVITDRDTGRSRGFGFVNFSSDESASSALSAMDGQDLNGRNIRVSFANDRPSGPRSSGGGGYGGGGYGGGGGYGGASRNGGW | 147 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00037 | 147 | SMART | rrm1_1 | 37 | 110 | IPR000504 | GO:0003723 | |
Cca01g00037 | 147 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 146 | IPR035979 | GO:0003676 | |
Cca01g00037 | 147 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 108 | IPR000504 | GO:0003723 | |
Cca01g00037 | 147 | Gene3D | - | 14 | 147 | IPR012677 | - | |
Cca01g00037 | 147 | MobiDBLite | consensus disorder prediction | 110 | 147 | - | - | |
Cca01g00037 | 147 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 1 | 142 | - | - | |
Cca01g00037 | 147 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 114 | IPR000504 | GO:0003723 | |
Cca01g00037 | 147 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL | 1 | 142 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00037 | Cca-Chr1 | 411696 | 413778 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g00037 | 35 | 124 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 40.000 | 1.98e-14 | 67.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00037 | - | - | gmx:100499841 | 206.838 |