Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00037 ATGGCACTGTTTAACAAGTTGGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCAGACAAGCACCTGTTGCATCCATGCTTAATTCTATTCGCTGCATGTCTTCAAGCAAGCTTTTCGTTGGAGGCCTTTCATATGGGGTTGATGATCAGTCTCTTAAGGATGCGTTTGCTAGCTTTGGAGATGTTGTTGAGGCAAGAGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGGTTTGTTAACTTCTCCAGTGACGAATCTGCAAGTTCGGCACTCTCTGCAATGGATGGGCAGGATCTAAATGGGAGAAACATTCGGGTATCCTTTGCAAATGATAGGCCTTCTGGACCTCGATCTAgtggtggtggtggttatggcgggggtggctatggtggcgggggtggctatggtggtgcttctcgtaatggtggttggtgA 444 0.3761 MALFNKLGNVLRQGAARSRQAPVASMLNSIRCMSSSKLFVGGLSYGVDDQSLKDAFASFGDVVEARVITDRDTGRSRGFGFVNFSSDESASSALSAMDGQDLNGRNIRVSFANDRPSGPRSSGGGGYGGGGYGGGGGYGGASRNGGW 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00037 147 SMART rrm1_1 37 110 IPR000504 GO:0003723
Cca01g00037 147 SUPERFAMILY RNA-binding domain, RBD 25 146 IPR035979 GO:0003676
Cca01g00037 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Cca01g00037 147 Gene3D - 14 147 IPR012677 -
Cca01g00037 147 MobiDBLite consensus disorder prediction 110 147 - -
Cca01g00037 147 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 142 - -
Cca01g00037 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Cca01g00037 147 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00037 Cca-Chr1 411696 413778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00037 35 124 Eukaryotic Initiation Factors Gene Family AT4G34110 40.000 1.98e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00037 - - gmx:100499841 206.838