Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00029 atgaagaagaagaagaagcagGTGCCGGAGTGGTTGAATAGTTCTCTGTGGTACTCTCCCTCCGACCACCACCGCTTTGAccctccctctcctccctctcctcctcctcctcctctccctccccctGTCTTGGTCAGAGAAGATCCACCGACAATCCCAACCAATCACAGCATTTCTTCTGCGTCTGCTTCTGCTTCCTCCGCCGCTCAGACTCAGTTGTTGGTCGAGTTATCTAGGAAGGTGATAGACATGCGTGAGTTGAGAAGAGTCGCTTCTCAAGATATTGCCGCCCCCGCCTTACGTCCTACGCTCTGGAAGCTTTTGCTTGGATATCTTCCGCCCGATCGTGCCCTTTGGTCCTCTGAATTAGCCAAGAAGAGGTCACAGTACAAACATTTCAAAGACGACCTCCTCATGAATCCTTCAGAAATCATCAGGAGAATGCACAACTCCACTTCCCATGACATCGATGATGCAAAGCCTCATACTCGGGCCTTGCTTTCTAGATCACAAATCACTCACGGGGACCACCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAGTTCTTCCAGGACACAGAGATCATAGAACAGATTGACCGAGATGTAAAGCGTACTCATCCAGATATGCACTTCTTCTCGGGTGATTCTCAATTTGCAAAATCTAATCAGGAGGCTTTTAAGAACATATTAATTATTTTTGCTAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAGGTATTGGCTCCTCTCTTCTATGTGTTCAGAAATGACCCTGATGAGGAAAATGCGGGCTTTGCTGAAGCGGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTAAACAACTTGACAATAGTATCGTTGGAATCCGCTCCACTATTACAAGATTGTCCCAGCTTTTAAAGGAACACGATGAAGAACTGTGGCGTCATCTTGAGATCACTACCAAGGTCAACCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAATTTGATTTTGCTGACATCCTTCATATTTGGGACACCCTTTTAAGTGATCCAGAGGGTCCTAAGGAGACACTTCTCAGAGTATGCTGTGCAATGCTAATTCTCGTTCGTAGGCGCCTTCTAGCGGGTGATTTCACTTCTAACCTCAAGTTGCTGCAAAGTTACCCCTCTACAAACATTAGTCATTTGCTCCATGTAGCAAATAAGTTACGTGTACAAAAAGTAAAAGAGGAGGACCCGGTGAGAACTAATATCAAAAACAACATGCGAATTGCAAACTCATTCGTTCACGATGGATGGCTGTTCACCATTCTATGCACAGCTGTTCCATTTTTCATGTTAACATTTTATCCTCTGGAAATTTCTATACCATATGGTGGTGCTGTTATTTGCTCTAATTTTTATTGGAGGCAAGTCCAACAGTTTGGAAAGTCAGAGACTTTCATTGAAAATCCCCCAGCATTCACAATTGAAAAAGTAAAAGAGGAGGACCCGGTGAGAACTAATATCAAAAACAACATGCGAATTGCAAACTCATTCGTTCACGATGGATGGCTGTTCACCATTCTATGCACAGCTGTTCCATTTTTCATGTTAACATTTTATCCTCTGGTCCTTTTAATATTTGTCATCACCCAAATCTGCAGTCTCCTCCTCAAGCCATTGGGACTCGCTCAATTCATTTCACAAATGATGGCTGGTCTAGTTCTACAAGCTTGTTTTGAGGTGGAACCATTGGGCACAGGCTTGAGGAAGTTGTTTCCGTATGGAACTCACGACACCATTTCAACAATATCATCGATTGGTTTTGTGCTCTTCATTTTTATAAACGGTGTGCAGATGGATTTCAGCTTGATAACAAGGATGGGAAAGAGGGCATGGGCCATTGCCATAGCGGGATTGGTAGTGCCTCTTTTCACTTCCATTTCAGCACTAATCTTATTCAACAATCATGTAACTAAGTACATAGGAGACTACGATAATTTAGTTGTTGCACTGGTGTCGCACACTGTCATTTCATTTGCGGTCATTGCTTCCCTGCTTAATGAACTCAAAATGCAAAACTCGGAACTCGGCAAATTGGCACTATCCTCAGCATTGGTGAGTGACGTATTGTGCACAATCGCTACCACCACCGGCACTGCATTAATGGTCACTGATGATTCTGGTGTGTCAAAGGTTGTAAAAAACTTGTTCAGTTTAGTTGCCATGGGTGTCTTTGTTCCATTACTGTGTCGGCCAGCAATGTTTTGGATCATCAAACATACTCCAGAAGGAAGACCTGTGAAGAATAGTTACATTTACATCATCATCTCAATGGTCTTTCTTCTAGGTTGGCTTTCGGTTAAGATAAATCAAGAATTCGTGCTTGGAGCCTTCGTTTTGGGATTGTCTGTGCCAGAAGGACCTCCACTAGGATCTGCATTGGTTAAGAAGCTTAATTTCTTTTCTACTACCTTCCTCTTGCCTATCTACGTCACCACCTCTATGTTGAAAGCAGATTTTTCCATGGATTTTTCATCGGTATCAGTTATAACTATCGCTTTCGTCATCATTATGACTCACTTCATCAAAATGATATCATGCATTGTATCCGCCCTCAGTTGCAACATTCCCTTGCGTGACGCTCTCTCTCTTGCCCTCATTTTGAACTCCAAAGGCGTAGTGGAAATCGGCCTCTACTGCTTCTTATACGACAATGAGATAATCGATGGGCAAGCATTCGGAGTAATGATAGTGAGCATAATGATGATAGCAAGCATTGTGCAATGGTCTGTGAAGTTTTTGTATGATCCTTCGAGAAAATACGGTGGCTACCAGAAAAGGAACATGATTAGTTTAAGGTCGTGGTCTGAGCTGAGGATGGTGGTGTGCATTCATAAAATAAATCACATATCGTCAATGATAGACCTGCTTGACCTGTGTTGTCCAACAGCAGAAAATCCAATCACTGTGGATGTGTTGCATCTGATAGAGCTAGTTGGAAGGGCCTTACCCATTTTCATTCACCACCATTTCCAGAGGCAAGGGACAGGGTTTCGCAAGTCATACTCAGATGATATCATTCTTGCTTTCGATATTTACGAGCATAATAACCCTCATGCAATAACAGCATATCCATGCACGGCAATATCTCCACCCTCCCTCATGTATGAAGATGTTTGCAACCTCGCGTTTGACAAAGTGGCGTCCATTATAATTCTTCCATTTCATCTTAGATGGTCCACTGACGGTGAGGTTGAATATGATGACAAGAACATAAGGGCACTGAATTGTAGGGTCTTAGAAATATCTCCATGCTCGGTCGGTATCCTTGTGAGTCGTCGTGCTTCCCTCCAAATTAGAGATTCATGCATTCGATTAGCCATGGTTTATTTGGGAGGACAAGATGATGAAGAGGCCTTATGCATAGCTAAGAGAGCAATTAGGAACCCGGGGGTGAACCTGGTAGTTTACCACCTTGTTGCTAATAACTCGGAGGAAGAAGTGgatgatgatgatgatgaagaGCTACAAGATGTCAAGTACGAACATAGTGTAAGGTATCAACAAGTCATAGCAATGGAAGGATCTGAGACTGCTTCTTTTCTTCGTCACATAGTGAAAGAACATGACTTCTTCATAGTTGGGAGACGGCATGGGATCAGTTCACCTCAAACGGATGGACTTACAAACTGGAGTGAATTTCCAGAATTAGGTGTCATCGGTGATTTTCTTGCTTCACCGGATTTGCAGAGTCGTGCATCCATTTTGGTGGTGCAGCAACAACTCTCGGTCAAGAAACATGATGGCTGGTTATTGTAG 3840 0.4201 MKKKKKQVPEWLNSSLWYSPSDHHRFDPPSPPSPPPPPLPPPVLVREDPPTIPTNHSISSASASASSAAQTQLLVELSRKVIDMRELRRVASQDIAAPALRPTLWKLLLGYLPPDRALWSSELAKKRSQYKHFKDDLLMNPSEIIRRMHNSTSHDIDDAKPHTRALLSRSQITHGDHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDMHFFSGDSQFAKSNQEAFKNILIIFAKLNPGIRYVQGMNEVLAPLFYVFRNDPDEENAGFAEADTFFCFVELLSGFQDNFCKQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFDFADILHIWDTLLSDPEGPKETLLRVCCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQKVKEEDPVRTNIKNNMRIANSFVHDGWLFTILCTAVPFFMLTFYPLEISIPYGGAVICSNFYWRQVQQFGKSETFIENPPAFTIEKVKEEDPVRTNIKNNMRIANSFVHDGWLFTILCTAVPFFMLTFYPLVLLIFVITQICSLLLKPLGLAQFISQMMAGLVLQACFEVEPLGTGLRKLFPYGTHDTISTISSIGFVLFIFINGVQMDFSLITRMGKRAWAIAIAGLVVPLFTSISALILFNNHVTKYIGDYDNLVVALVSHTVISFAVIASLLNELKMQNSELGKLALSSALVSDVLCTIATTTGTALMVTDDSGVSKVVKNLFSLVAMGVFVPLLCRPAMFWIIKHTPEGRPVKNSYIYIIISMVFLLGWLSVKINQEFVLGAFVLGLSVPEGPPLGSALVKKLNFFSTTFLLPIYVTTSMLKADFSMDFSSVSVITIAFVIIMTHFIKMISCIVSALSCNIPLRDALSLALILNSKGVVEIGLYCFLYDNEIIDGQAFGVMIVSIMMIASIVQWSVKFLYDPSRKYGGYQKRNMISLRSWSELRMVVCIHKINHISSMIDLLDLCCPTAENPITVDVLHLIELVGRALPIFIHHHFQRQGTGFRKSYSDDIILAFDIYEHNNPHAITAYPCTAISPPSLMYEDVCNLAFDKVASIIILPFHLRWSTDGEVEYDDKNIRALNCRVLEISPCSVGILVSRRASLQIRDSCIRLAMVYLGGQDDEEALCIAKRAIRNPGVNLVVYHLVANNSEEEVDDDDDEELQDVKYEHSVRYQQVIAMEGSETASFLRHIVKEHDFFIVGRRHGISSPQTDGLTNWSEFPELGVIGDFLASPDLQSRASILVVQQQLSVKKHDGWLL 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00029 1279 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 300 418 IPR035969 -
Cca01g00029 1279 PANTHER CATION/H + ANTIPORTER 541 1274 - -
Cca01g00029 1279 Pfam Sodium/hydrogen exchanger family 551 934 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca01g00029 1279 Gene3D - 547 948 IPR038770 -
Cca01g00029 1279 Gene3D - 299 428 - -
Cca01g00029 1279 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 183 291 - -
Cca01g00029 1279 Pfam Rab-GTPase-TBC domain 193 384 IPR000195 -
Cca01g00029 1279 MobiDBLite consensus disorder prediction 25 48 - -
Cca01g00029 1279 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 76 322 IPR035969 -
Cca01g00029 1279 MobiDBLite consensus disorder prediction 22 65 - -
Cca01g00029 1279 ProSiteProfiles TBC/rab GAP domain profile. 95 363 IPR000195 -
Cca01g00029 1279 PANTHER CATION/H+ EXCHANGER 3 541 1274 - -
Cca01g00029 1279 SMART tbc_4 92 389 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00029 Cca-Chr1 317464 327395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00029 547 1268 Antiporter Super Family AT5G22900 36.104 1.43e-142 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00029 K24796 - gmx:100785062 1088.56