LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g00020	ATGATCAGGGTGACAAGCATGCGAACTTCATGGGCTGATTTAGCTGTGAATTCCGCAGCTGAAAATGGAGGAACATCCAACTCCACAGCTCCTTCGCGCCCTGTTTATGTGCCTCCGCATCTTAGGAACCGTGCACCAGCAGCAGAATCCCAtgcacctgcacctgcacctgcacctgcaccGTCCAATGTGATTGCCaataataataataataataatGCAGGGCCACGGTGGAGTGCTCCGCCGCACGCTAACGGTTGGGGGAACACAAGCGTTGGTTGGGACCGCCGCGAAGCGAACCCCTTCGGAGACCAGGAGGAAAAAGCAGAGGAGGCGTTTGGCGAGCAGGAAAATACGGGAATCAATTTCGATGCGTACGAAGACATTCCGGTGGAGACGAGCGGTGAAAACGTGGCACCGCCCGTGAATACTTTTGCGGAGATTGACTTGGGCGAAGCGCTTAATAAGAACATTAGACGGTGCAAATATGTGAAGCCGACGCCTATTCAGCGACATGCCATACCCATATCCCTTTCGGGTCGTGATTTGATGGCTTGTGCGCAGACTGGGTCTGGAAAGACTGCTGCATTTTGTTTCCCAATTATCAGTGGGATTATGAGAGGCCAACCCTTGCAGCAAAGGCCTCCTCGTGGGGTTCGAACAGTTTATCCTCTTGCCCTTGTTCTCTCTCCAACCAGAGAGTTATCCATGCAAATACATGAAGAGACTAGGAAATTTGCGTACCAGACAGGGGTTAGGGTTGTTGTTGCCTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTCGAGAGAGGGGTGGATATTCTTGTAGCAACTCCAGGTAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATTAGATATCTGGCCTTGGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTGGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGACTGTTGGAAGAGTTGGCTCAAGTACCGACTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCTCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCCTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTAGAGCACTGGTTGTGTCGTAATAATTTTCCAGCAACTACTATTCATGGTGACAGGACACAGCAGGAAAGAGAATTGGCATTGAGGTCATTTAAAAGTGGTAACACCCCCATACTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTCGACCTTCCTAATGATATCGATGATTATGTACACCGTATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCCCTAGCAAGGGCTTTAGCAGATCTGATGCAAGAATCAAATCAAGAAGTACCTGATTGGCTCTCACGATATGCTGCTCGCTCTACCTTTGGTGGTGGACGAAATCGGCGATCAGGAGGTCGTTTTGGTGCTCGTGACATTCGAAAGGAAGGTTCTTTTAGTAGAGGTGGTTCTGATTACTACAGTGCAGGAAACAATGGTGGATATGGCGCTCCAAGTGGGTATGCTGGAGGATACGGTCCTGGGGTAACCAGTGCATGGGACTGA	1806	0.469	MIRVTSMRTSWADLAVNSAAENGGTSNSTAPSRPVYVPPHLRNRAPAAESHAPAPAPAPAPSNVIANNNNNNNAGPRWSAPPHANGWGNTSVGWDRREANPFGDQEEKAEEAFGEQENTGINFDAYEDIPVETSGENVAPPVNTFAEIDLGEALNKNIRRCKYVKPTPIQRHAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMRGQPLQQRPPRGVRTVYPLALVLSPTRELSMQIHEETRKFAYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLTVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNNFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQESNQEVPDWLSRYAARSTFGGGRNRRSGGRFGARDIRKEGSFSRGGSDYYSAGNNGGYGAPSGYAGGYGPGVTSAWD	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g00020	601	Pfam	Helicase conserved C-terminal domain	384	499	IPR001650	-
	Cca01g00020	601	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	56	573	-	-
	Cca01g00020	601	SMART	ultradead3	162	375	IPR014001	-
	Cca01g00020	601	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	371	538	IPR001650	-
	Cca01g00020	601	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	174	360	IPR014001	-
	Cca01g00020	601	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	225	517	IPR027417	-
	Cca01g00020	601	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	143	171	IPR014014	GO:0003724
	Cca01g00020	601	CDD	DEADc_DDX3_DDX4	144	366	IPR044763	GO:0003724\|GO:0005524
	Cca01g00020	601	MobiDBLite	consensus disorder prediction	62	78	-	-
	Cca01g00020	601	CDD	SF2_C_DEAD	372	508	-	-
	Cca01g00020	601	SMART	helicmild6	418	499	IPR001650	-
	Cca01g00020	601	MobiDBLite	consensus disorder prediction	19	33	-	-
	Cca01g00020	601	MobiDBLite	consensus disorder prediction	19	119	-	-
	Cca01g00020	601	Gene3D	-	362	542	IPR027417	-
	Cca01g00020	601	Gene3D	-	99	361	IPR027417	-
	Cca01g00020	601	MobiDBLite	consensus disorder prediction	99	114	-	-
	Cca01g00020	601	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN	56	573	-	-
	Cca01g00020	601	Pfam	DEAD/DEAH box helicase	167	349	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g00020	Cca-Chr1	231337	236070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g00020	141	531	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.899	5.55e-64	214

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g00020	K11594		-	gmx:100781668	978.008