Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00015 ATGGGAGAAATAGAAAGAGAGGCAATGTCAAGGTGGGAGAAGGAAGAGGAATTAGAAGAAGCACAAGCCCAAATAGATATCTGGAAGTACATATTTGGGTTTGTGGAACTTGCAGTTGTGAAATGTGCGATTGAGCTTGGCATAGCCGAAGCCATAGAAAAGCATGCAAGTCCCATGACACTAGAGGAGTTATCATCAACTCTAGCCTGTGATTCTTTACTTCTGAACCGCATCATGCGCTTCCTAGTGCACCGAAAGATATTCAAAGTGACACCCACGGGGTATTCTCAAACACCTTTGTCTCGGCGTTTGATGAGAAACGGTCAACATAGCATGGCTGGTATGCTTTTGCTGGAGAGTAATCCTGTAATGTTGGCACCTTGGCACAGTCTAAGTGCTCGTGTCTTGGTCAATGGCAATCCCTCATTCGCAAAGGCTCATGGTGAGGACGTGTGGCGCTATGCTGAGGCACATCTCGACCACAGCAACCTCATCAATGAGGCTATGGCATGTGATGCTAAGCTTGTTATGCCTACCGTCATTGAAAGTTGCAGCGAGGCATTTGATGGTGTAAAGTCCTTGGTTGATGTGGGTGGTGGTAATGGCACCGCCATGAGCATCCTGGCCAAGGCTTGCCCTTGGATTCGATGCATCAATTATGATCTCCCTCATGTCATTGCCGAGGCCTCTAAGTGCGATGGCGTCGAACTTGTGGCAGGTGACATGTTTCTGAGTGTTCCAAAGGCTGATGCTGCTTTTTTCATGTGGGTTTTGCACGACTGGTCTGACCAAGAGTGCATCCAAATCTTGANNNNNNNNNNNNNNNACCAAAGGAAAATGGAAGGGTTATTATTGTGGAGTCGGTGA 867 0.466 MGEIEREAMSRWEKEEELEEAQAQIDIWKYIFGFVELAVVKCAIELGIAEAIEKHASPMTLEELSSTLACDSLLLNRIMRFLVHRKIFKVTPTGYSQTPLSRRLMRNGQHSMAGMLLLESNPVMLAPWHSLSARVLVNGNPSFAKAHGEDVWRYAEAHLDHSNLINEAMACDAKLVMPTVIESCSEAFDGVKSLVDVGGGNGTAMSILAKACPWIRCINYDLPHVIAEASKCDGVELVAGDMFLSVPKADAAFFMWVLHDWSDQECIQILXXXXXXQRKMEGLLLWSR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00015 288 Gene3D - 9 104 IPR036388 -
Cca01g00015 288 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 14 273 - -
Cca01g00015 288 SUPERFAMILY "Winged helix" DNA-binding domain 19 108 IPR036390 -
Cca01g00015 288 CDD AdoMet_MTases 194 258 - -
Cca01g00015 288 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Cca01g00015 288 PANTHER O-METHYLTRANSFERASE 14 273 IPR016461 GO:0008168
Cca01g00015 288 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 288 IPR016461 GO:0008168
Cca01g00015 288 Pfam O-methyltransferase domain 128 272 IPR001077 GO:0008171
Cca01g00015 288 Gene3D Vaccinia Virus protein VP39 106 284 IPR029063 -
Cca01g00015 288 Coils Coil 4 24 - -
Cca01g00015 288 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 271 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00015 Cca-Chr1 164006 165425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00015 40 270 Monolignol Biosynthesis Gene Families AT5G54160 34.286 1.92e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00015 K22588 - gmx:100782951 412.149