Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00011 ATGAGAGGAAGGAGTTACAGTCCATCGCCTCCGCCCCCTCGATATAGCAGAAGAGGAGGAGGAAGGAGCCCCAGCCCTAGGGGCCGCTACCCTCCTCGTCCCAGACAGCAAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCCGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTCAAAGACATTTACCTGCCTAAGGATTACTACACTGGggaaccccgtggctttggttttgttcaatacgtcgatcccgccgatgctgctgatgctaaatatcatatggatggtcaaattcttcttggtcgtgaactcaccgttgtctttgctgaggagaataggaagaagccAACTGAGATGAGGTCAAGAGAGAGGAGGGGTCGATTTTATGATAGAAGGAGGTCTCCTCCCCGCTACTCTCGATCTCCACCACCACGTCATAGATCTCGTTCTCGCAGTCGTGATTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGGTCTGTCACCCCAGAGGATAGAAGGTACAGCCGAGAAAGATCTTATTCGCAACAAAGTAGAGAGAGGTCATATTCTCGATCTCCACCTTATAATGGGGGCTCAAGAAGCCGAAGTCGGAGTCCGGCAAAGGTCCCAGGCCGGAGCAGAAGTCCAAGTCCGAACCGTGATGTAAGGGAACCAACCCGTGGTAGGTCCCCCAGTCAGTGA 732 0.429 MRGRSYSPSPPPPRYSRRGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSPPPRHRSRSRSRDYYSPPPKRREYSRSVTPEDRRYSRERSYSQQSRERSYSRSPPYNGGSRSRSRSPAKVPGRSRSPSPNRDVREPTRGRSPSQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00011 243 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 227 - -
Cca01g00011 243 MobiDBLite consensus disorder prediction 156 194 - -
Cca01g00011 243 MobiDBLite consensus disorder prediction 195 222 - -
Cca01g00011 243 MobiDBLite consensus disorder prediction 121 145 - -
Cca01g00011 243 SMART rrm1_1 42 115 IPR000504 GO:0003723
Cca01g00011 243 MobiDBLite consensus disorder prediction 1 43 - -
Cca01g00011 243 SUPERFAMILY RNA-binding domain, RBD 40 146 IPR035979 GO:0003676
Cca01g00011 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Cca01g00011 243 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 227 - -
Cca01g00011 243 Gene3D - 4 133 IPR012677 -
Cca01g00011 243 MobiDBLite consensus disorder prediction 1 17 - -
Cca01g00011 243 MobiDBLite consensus disorder prediction 121 243 - -
Cca01g00011 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00011 Cca-Chr1 127679 130151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00011 41 166 Eukaryotic Initiation Factors Gene Family AT4G34110 28.125 1.77e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00011 K12900 - gmx:100775883 320.472