Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00001 ATGGAGGAATCAAATGCAGCAAGGTATTGGTGTCATATGTGCTCTCAAATGGTCAATCCTATCATGGATGTGGAAATCAAATGCCCCTTTTGCCAAAGTGGATTTGTTGAAGAAATGAGAAACGCCACCAGTCGCAGCGACATTCACAATATGCCAGAAGCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCACCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTCAAAGACTGAGGCAAATAGAGAATGATGATTTTGATAATGGTAATCGCGATGATGTTGATGGTGTAGCAGACCATGGTGGAGAAACTGCTTATGATCAAGAGCTTGAGTCCATCCTTCGCAGAAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAGCTGGACTGGCATCTGAATCATATGAGAATTCGGACAGCGATAACCATAACAGAGAAAGAGAGCGTGTAATCTTGATCAATCCTTTAAATCAGACTATTATTGTCCGAGGTTCCTATGAGTCAAACCGGGCTCAAAGTGATAATCATAGCCCCGTTGGGTCTCTGGGTGATTATTTCATAGGGCCTGGTTTGGATTTATTGTTGCAACATTTGGCTGAGAATGATCCAAATAGATATGGAACTCCACCTGCTCAGAAGGAGGTCATTGAAGCATTACCTACTGTGACAATCAATGATAATTTGCAGTGTTCTGTGTGTCTGGATGCTTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCTTGCAAACATAGGTTTCATAGTGGGTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCGGTATGCAGGCTTCAGTTGCCAGTCGATGAATCTAAGCAAGACCCTGACGTGTCAAGGAATAGCAGAAACCGAAGGGAGGATGGGAATATTGAGCATGACAATGCTGAAGAAAGAGATGGTGAAGGAAGAAATGCAAGTGGGGGTAGAAGATTCTCGTTTCCGTGGCCTTTCAATGGATTATTTTCTTCTTCGAACTCTTCATCCTCTTACAGTTCCAATGCAAACGGAAATGATACCCAATCAGATGAAAATTGA 1083 0.4349 MEESNAARYWCHMCSQMVNPIMDVEIKCPFCQSGFVEEMRNATSRSDIHNMPEADFESDRALSLWAPILLGMMGNPRHPQRLRQIENDDFDNGNRDDVDGVADHGGETAYDQELESILRRRRNSATILQLLQGIRAGLASESYENSDSDNHNRERERVILINPLNQTIIVRGSYESNRAQSDNHSPVGSLGDYFIGPGLDLLLQHLAENDPNRYGTPPAQKEVIEALPTVTINDNLQCSVCLDAFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPVDESKQDPDVSRNSRNRREDGNIEHDNAEERDGEGRNASGGRRFSFPWPFNGLFSSSNSSSSYSSNANGNDTQSDEN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00001 360 MobiDBLite consensus disorder prediction 286 321 - -
Cca01g00001 360 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Cca01g00001 360 MobiDBLite consensus disorder prediction 339 360 - -
Cca01g00001 360 CDD RING-H2_RNF126_like 237 279 - -
Cca01g00001 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 285 IPR013083 -
Cca01g00001 360 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 339 - -
Cca01g00001 360 MobiDBLite consensus disorder prediction 286 326 - -
Cca01g00001 360 SMART ring_2 238 278 IPR001841 -
Cca01g00001 360 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Cca01g00001 360 Pfam Ring finger domain 237 279 IPR001841 -
Cca01g00001 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 339 - -
Cca01g00001 360 SUPERFAMILY RING/U-box 226 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00001 Cca-Chr1 21925 24569 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00001 128 285 C3H Transcription Factor Family AT1G26800 38.125 1.55e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00001 K11982 - gmx:100784876 580.482