Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01843 ATGGGCAGAAAATGCTCACATTGTGGAAACATAGGCCATAATTCAAGGACATGTAATTCCTTAAGAGGGGGTGGTAATAGTAGTTTTGTTGGAGTTAGACTCTTTGGTGTTCAATTAGATTTATCTTCTTCTTGTGTTTCCATGAAAAAAAGTTTTAGTATGGATTCTTTATTTCCAActtcttcatcttctccttcttcctctttttcttcctcAAGATTATCCATTGATGATAGAACTTCTATTGGGTATTTATCAGATGGTCTCATAGTTAGAGCACAAGAAAGAAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACAGAAAATTCCTTGTTGGACTTGAGAAGTTAGGAAAAGGAGATTGGAGAGGTATCTCAAGAAACTATGTGACTACAAGAACACCAACTCAAGTTGCAAGTCATGCTCAAAAGTACTTTATTCGACTTTCAACCATCAATAAGAAGAAGAGACGTTCAAGTCTCTTTGACATGGTTGGTAGCAGCAACAGAAACAGAAGAGTTGATCCAATGAACATCTCAAAAAGCAAGTCAGGAGAATCTATTTGTTGTAGACATGATGATTATGAACATGTAAAATCAAAATGTGAAGCTGAAAAAGATGCCACGTTGTCACTTCTAGTAACATCATTTGAACAAAACATTGGTGATAGTAATATTAATTCCTCTGTGTGTCAAGTTGAAGAAGCAGAACATGAAAATGTGCCTGTTTGGTTACATCCTCTAACAAAGTCATTAAATATGAAACTTGTGATGCCAAATTCTTCAAATGCAGCAACACCTGATCTTGAGCTATCTCTTGCAGTCCCTAAGGCTAAGAATATGGAACAAGATAAAACATCATCTAGTTCATTTCTTATTGGGCCAATTAGTGTGACTTAA 900 0.3422 MGRKCSHCGNIGHNSRTCNSLRGGGNSSFVGVRLFGVQLDLSSSCVSMKKSFSMDSLFPTSSSSPSSSFSSSRLSIDDRTSIGYLSDGLIVRAQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLSTINKKKRRSSLFDMVGSSNRNRRVDPMNISKSKSGESICCRHDDYEHVKSKCEAEKDATLSLLVTSFEQNIGDSNINSSVCQVEEAEHENVPVWLHPLTKSLNMKLVMPNSSNAATPDLELSLAVPKAKNMEQDKTSSSSFLIGPISVT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01843 299 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Car08g01843 299 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Car08g01843 299 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 298 - -
Car08g01843 299 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Car08g01843 299 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Car08g01843 299 SMART sant 98 148 IPR001005 -
Car08g01843 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Car08g01843 299 CDD SANT 101 146 IPR001005 -
Car08g01843 299 PANTHER TRANSCRIPTION FACTOR KUA1 1 298 - -
Car08g01843 299 Gene3D - 100 153 - -
Car08g01843 299 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Car08g01843 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01843 Car-Chr8 28437473 28439604 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car08g01843 Myb_DNA-binding 7.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01843 - - adu:107490116 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01843 08 28437473 28439604 Car08g01843 08 28437473 28439604 ECH