Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01840 ATGATGGTGATCAACAGGTTGAAGAGAGAGCAATGTGATCATACCAAACACGATTCTAGCTTCTCCGATTGGAAGATTCTGATTGGTCCTTCAGATTGGGAAGACCATTCCAAAGGAAAGGAAGGATGTAGTAGATACAGAATTCCCAACCTGCCACAAACATTTGGTCCAGGAGTTTATGAGCTTGGAATAGTTGTGTCAAGAAATTATTTGGGGCGTGAAATTTACAAGTTTGCCACTGACCCTTGTAAAGTTGTTGTGGTTTATCTAGGAAAAGCTGAAAATGTTAGTGCAAGATTGCAGTGTTATGGCAGAAATGGAGCTCATTTGAGTAATGCTTCCTCTTCAATTGAATCTTCTAGTTCTACCCTAATGAGACACTCATTGTTTCATCATATATTTTCTAAAGGCTACCCCATTGTTTATAGATGGGCTCCTATGGAGAACAATAGTGATGCTCTAAAAACAGAAGCTAAACTTCTCGATACATTTGATTACGGATGGAACACAATTAATAATGGTAGACGACGACCTTATGATATTCTTCAAATGCTTGACAAGATTGCTTCAACCACTGTAACATTTTCATATGTGGCCAAATCACTTATACCCTTCATTCAAAACAAAGTGGGGATACCAATTAAATCAAACAAGTTTCCTAAGACATATGACAAATCAGATGAAGTGGACAATTATGGGAGCTATAGATTCCTATCTAAGATCTTCAAATTCAACCGATCACATCCTATGATAATTCAAAATTCCACTAGTGGTGCCATTGAGAAGTATGGTAAAATTTGTGGAGTGATATTAAATGATGGTTCTATTTGTACAAGACCACCTATTGAAAAAAGAGTGAGGTGTTTTGAACACAAAGGAATGAGAATAAATGTGTTCAATGCTAAAGCTATTGGAGCACCAAAGTTAGAATTAGAAATTATTGATGAAAGTATCACAAAAACAATTATATGTGGAATCATCTTGGATGATAGTTCCACTTGTAGCAAACAACCAGTTAAAGGAAGACAAAGATGTCATGAACACAAAGGAATGAGAACAAATGTGTCTAATGCTAAAGCTATAAGAGCACCAAAGTTAGAATCAGAAATTATTGATGATAGCATCTCAAAAACTATTATATGTGGAATCATCTTGAATGATGGTTCCACATGTAGAAAATAA 1182 0.3553 MMVINRLKREQCDHTKHDSSFSDWKILIGPSDWEDHSKGKEGCSRYRIPNLPQTFGPGVYELGIVVSRNYLGREIYKFATDPCKVVVVYLGKAENVSARLQCYGRNGAHLSNASSSIESSSSTLMRHSLFHHIFSKGYPIVYRWAPMENNSDALKTEAKLLDTFDYGWNTINNGRRRPYDILQMLDKIASTTVTFSYVAKSLIPFIQNKVGIPIKSNKFPKTYDKSDEVDNYGSYRFLSKIFKFNRSHPMIIQNSTSGAIEKYGKICGVILNDGSICTRPPIEKRVRCFEHKGMRINVFNAKAIGAPKLELEIIDESITKTIICGIILDDSSTCSKQPVKGRQRCHEHKGMRTNVSNAKAIRAPKLESEIIDDSISKTIICGIILNDGSTCRK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01840 393 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 367 IPR038909 GO:0003677|GO:0006355
Car08g01840 393 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 319 393 IPR038909 GO:0003677|GO:0006355
Car08g01840 393 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 367 - -
Car08g01840 393 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 319 393 - -
Car08g01840 393 Pfam GIY-YIG domain-containing protein 21 182 - -
Car08g01840 393 SMART uri_9 75 174 IPR000305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01840 Car-Chr8 28416626 28418545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01840 7 391 HRT Transcription Factor Family AT5G56780 38.875 4.51e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Car08g01840 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01840 - - lang:109350609 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01840 08 28416626 28418545 Car08g01840 08 28416626 28418545 ECH