Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01825 ATGAATTTTGCAGCATCGTTGTGCAGAAGATTGAATATCAAGGAACTCGTGACAAATGTTCCTGTGTACAGAAGCACTGGTGATGTTTCGGGTGAGGGATTGAGTCTGGTGTTCCGTCGTTGGGCTACCAAAAAGACAGCTGGGTCCACAAAAAATGGACGAGATTCAAAGCCCAAGAACCTTGGAGTGAAGAAATTTGGTGGAGAGAGGGTAATACCTGGAAACATCATTGTTAGGCAACGTGGTACTCGTTTTCATCCAGGAAACTATGTTGGACTGGGGAAAGATCATACTCTTTTTGCTTTGAAAGAGGGATGGATGCTTCTGCATCCGAACCAAAATACTGAGCCTGCACCTCAAATCCTGTCACCTGTTAAACCCGTTTCTGCTCCATCCCCTGAGAAGCCACAGCCCCCAGCAGCAAAATTGAACATTGATGATCTTCACCGCAAAACTGCCTCTCTTCTGGAAGAATATTTCAATATTCGGCTTTTGGACGAGGCATTACAGTGTGTGGATGAACTAAAAGCTCCAGCTTATTACCCAGAGTTTGTCAAGGAAGCCATTTCCCTTGGACTAGATAAAAGTCCGCCATGTGTTGAACCTGTTGCGAATCTTATTGAGCATCTGTTTATCAAGAAGATTCTCTCAGCTAGAGACATTGGAACTGGATGTTTGTTATTTGCTTCTCTGCTGGATGATATTGGCATAGATTTACCAAAAGCGCCAAGTAACTTTGGGGAGATAATAGGGAAACTAATTTTGGCCGGTGGTTTGGACTTTAAGGTTGTGATAGAGATACTTAAGAAGGTGAGTGATGACTACTTCCAGAAAACAATATTCAACTCTGCACCTTTGCAATTTATTTTTTTGGATCACAGTTTGCATTTCTAA 894 0.4251 MNFAASLCRRLNIKELVTNVPVYRSTGDVSGEGLSLVFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGWMLLHPNQNTEPAPQILSPVKPVSAPSPEKPQPPAAKLNIDDLHRKTASLLEEYFNIRLLDEALQCVDELKAPAYYPEFVKEAISLGLDKSPPCVEPVANLIEHLFIKKILSARDIGTGCLLFASLLDDIGIDLPKAPSNFGEIIGKLILAGGLDFKVVIEILKKVSDDYFQKTIFNSAPLQFIFLDHSLHF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01825 297 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 113 284 IPR045208 GO:0003743
Car08g01825 297 SMART ma3_7 148 260 IPR003891 -
Car08g01825 297 ProSitePatterns Ribosomal protein L27 signature. 74 88 IPR018261 GO:0003735|GO:0005840|GO:0006412
Car08g01825 297 TIGRFAM L27: ribosomal protein bL27 42 106 IPR001684 GO:0003735|GO:0005840|GO:0006412
Car08g01825 297 Pfam MA3 domain 149 260 IPR003891 -
Car08g01825 297 Gene3D - 141 289 - -
Car08g01825 297 SUPERFAMILY ARM repeat 143 294 IPR016024 -
Car08g01825 297 Gene3D - 46 124 - -
Car08g01825 297 ProSiteProfiles MI domain profile. 147 269 IPR003891 -
Car08g01825 297 Pfam Ribosomal L27 protein 42 108 IPR001684 GO:0003735|GO:0005840|GO:0006412
Car08g01825 297 PRINTS Ribosomal protein L27 signature 44 68 IPR001684 GO:0003735|GO:0005840|GO:0006412
Car08g01825 297 PRINTS Ribosomal protein L27 signature 94 118 IPR001684 GO:0003735|GO:0005840|GO:0006412
Car08g01825 297 PRINTS Ribosomal protein L27 signature 69 93 IPR001684 GO:0003735|GO:0005840|GO:0006412
Car08g01825 297 SUPERFAMILY Ribosomal L27 protein-like 42 111 - -
Car08g01825 297 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 113 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01825 Car-Chr8 28310809 28312606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01825 117 283 Eukaryotic Initiation Factors Gene Family AT4G30680 57.738 3.79e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01825 K03260 - cam:101498910 366.696