Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01824 ATGATGATACGAGCTAATCCAACGGTCCACGTGCCTCCATGGCCGATAAATGAAGATCCAATGGCTGAGATATATTCATCTTACTACGCTGACGATAGTAATGCCGGCGCCGGAGATTATTCTCCTTACTATCTACGAGAAGCACTGACGGCGCTACAGCGTTACCTTCCGTCAAACGAGTTAGACGCCGATTCCGACTCAGAGTTTCCCGGTCGTGAATCGGATTCTCCGGTGGACGCTTACTCATGCGACCATTTCCGCATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCACGCCGTCGTGATCCAAGAAAGTTTCATTACTCCGGCACGGCGTGTCCCGATTTTCGCAAAGGAAATTGTAAAAAAGGAGACGCGTGTGAGTACGCGCACGGTGTTTTCGAGTGTTGGCTTCATCCAGCGCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGTTGTCGCCGGCGTGTTTGTTTCTTTGCACACACACCGGAACAGATCCGTCTCAATGTTCAACAGAGTTCACGGAGTATTAACTCGCCGGATTCCTACGACGGTTCTCCGTTAAGACAGTTAGCGTTGCCGTTCATGTCTTCGCCGGTTTCTGTTTCTCCGACGGAATCACCGACGATGTCTCCCAAATCTTTGGGTTCTAGTTCAGTAAACGAGATGGTGGCTTCGTTACGTAATTTACAGCTTGGAAAGATGAAATCGATGCCACCTAATAGAAACAATGTTAAAATCGGGTCACCGGGTTTCGGTTCACCTAGAGGATCCGTTTTTCGACCCGGTTTTTGTAGTCTTCCGAATACACCGACTCAAGTATCGGGTTCGGGTCGGGTTGGTGTTGGATATTTTGATCTTTGGGATCAGAGTTGTGAGGAGGAGCCTATGATGGAGAGAGTTGAGTCTGGAAGGGATATAAGGGCTAAGATGTTTGAGAAATTGAGTAAAGAGAATTCTCTTGGTAATTCGGATCCGGGTTTGGGTCAATCGGGTGGGGCTCCGGATGTTGGGTGGGTTTCTGAGTTGCTAAAATGA 1098 0.49 MMIRANPTVHVPPWPINEDPMAEIYSSYYADDSNAGAGDYSPYYLREALTALQRYLPSNELDADSDSEFPGRESDSPVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVQQSSRSINSPDSYDGSPLRQLALPFMSSPVSVSPTESPTMSPKSLGSSSVNEMVASLRNLQLGKMKSMPPNRNNVKIGSPGFGSPRGSVFRPGFCSLPNTPTQVSGSGRVGVGYFDLWDQSCEEEPMMERVESGRDIRAKMFEKLSKENSLGNSDPGLGQSGGAPDVGWVSELLK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01824 365 MobiDBLite consensus disorder prediction 336 365 - -
Car08g01824 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
Car08g01824 365 PANTHER UNKEMPT FAMILY MEMBER 5 364 IPR045234 -
Car08g01824 365 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Car08g01824 365 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Car08g01824 365 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
Car08g01824 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 5 364 - -
Car08g01824 365 Gene3D - 126 188 - -
Car08g01824 365 MobiDBLite consensus disorder prediction 219 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01824 Car-Chr8 28297318 28299552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01824 65 187 C2H2 Transcription Factor Family AT5G12850 62.879 2.40e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car08g01824 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01824 - - aprc:113867365 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01824 08 28297318 28299552 Car08g01824 08 28297318 28299552 ECH