Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01821 ATGAGTAACAACAATAACTTGAGTTGTGTAAGAAACTCTGATCTCATAGATGCAAAGCTAGAAGAACATCAATTGTGTGGATCCAATCACTGTCCTTCTTGCGGTCACAACTTCGAATCCAAACCGGATTGGCTAGGTCTACCTGCAGGAGTGAAGTTTGATCCAACTGACCAAGAACTGATTGAACATCTTGAAGCTAAAGTGGAAGCAAAGAAAATGAAATCACACCCTTTGATAGATGAATTTATTCCAACAATTGAAGGAGAAGATGGAATTTGTTACACTCATCCTGAGAAACTTCCAGGAGTAACAAAAGATGGTTTGAGTAGGCATTTTTTCCATAGACCATCAAAGGCTTATACAACTGGGACAAGAAAAAGAAGGAAAATTCAAAATGAATGTGACTTGCAACAAGGTGGAGAAACTAGATGGCACAAAACAGGCAAGACTAGGCCAGTAATGGTAAATGGAAAACAAAAGGGTTGCAAGAAAATTCTAGTACTTTATACCAACTTTGGAAAAAATAGAAAACCTGAAAAAACCAATTGGGTGATGCACCAATACCATCTTGGTCAACATGAAGAAGAGAAAGAAGGAGAACTTGTTGTGTCAAAAATATTTTATCAAACACAACCAAGACAATGTAATTGGTCAGATAGAAGTGCAACAACTATTGGTGAAGGAAATGGTGAACCTAATTATAGAGATGAGatgtctaatgttaatgttaatgttaatgttaatgGTGTTACTCCAACAACAAGTTTCAATCATACCTTGGATAATGTTCAAGCTCAACAACTAAAATCAGATCATTTCAGCTTCATTCCTTTTAGAAAAAGCTTTTATGAGGTTGGAATAGGAGAAGCTTCAACGGCAAGTGAAGTGCAAGCAGCATCAAGGTCATATGAAGAAGAAGTACATGAAAGACACAAACAACAAAATCATCACATTGCAACCTCAGCATTCCATATCTCTCCACCTCCTCTTCACCAAACATCAATCATCCTTGATGAAAACTCCTACCAAGTCTCTAGAATTATGCTTCAAAATGAACATTTTCAGCAACAACAACATAAGCTAGGAATAGGAGGAAGGTCTACTTCTTGTTTGGAGGAACTCATCATGGGTTGCACTTCAACAACTCATCATATCAAAGACAAAGAGgaaTCATCCATCACAAACTCACAAGAAGCTGAATGGTTGAAGTACTCATCTTATTGGCCAGACCCTGATAATCCAGATCACCATGGATAG 1257 0.3667 MSNNNNLSCVRNSDLIDAKLEEHQLCGSNHCPSCGHNFESKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKKMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTKDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTIGEGNGEPNYRDEMSNVNVNVNVNGVTPTTSFNHTLDNVQAQQLKSDHFSFIPFRKSFYEVGIGEASTASEVQAASRSYEEEVHERHKQQNHHIATSAFHISPPPLHQTSIILDENSYQVSRIMLQNEHFQQQQHKLGIGGRSTSCLEELIMGCTSTTHHIKDKEESSITNSQEAEWLKYSSYWPDPDNPDHHG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01821 418 Pfam No apical meristem (NAM) protein 48 190 IPR003441 GO:0003677|GO:0006355
Car08g01821 418 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 394 - -
Car08g01821 418 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 394 IPR044799 GO:0003700
Car08g01821 418 ProSiteProfiles NAC domain profile. 47 209 IPR003441 GO:0003677|GO:0006355
Car08g01821 418 SUPERFAMILY NAC domain 41 209 IPR036093 GO:0003677|GO:0006355
Car08g01821 418 Gene3D NAC domain 56 213 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01821 Car-Chr8 28241326 28247617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01821 14 415 NAC Transcription Factor Family AT5G56620 52.074 1.48e-133 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car08g01821 NAM 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01821 - - gmx:100795246 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01821 08 28241326 28247617 Car08g01821 08 28241326 28247617 ECH